When I save a page or multiple, a dialog pops up, allowing me to
control the file format. Then, another dialog pops up wherein I
choose the destination file.

Both these dialogs are placed by the window manager, and often end
up obscuring the content that was just scanned. Which is a shame,
because sometime I need to look something up (like a date) when
making the filename. Hence, I find myself quite regularly first
moving both dialogs out of my view.

Wouldn't it be possible to replace the dialogs with a persistently
docked pane, maybe even including a file browser. Then, the window
manager wouldn't need to attempt to do magic, because gscan2pdf
knows how not to obscure the content.

Thanks for your consideration.

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