#1008726 apbs 3.4 requires FETK which does not support system SuperLU

Package:
apbs
Source:
apbs
Description:
Adaptive Poisson Boltzmann Solver
Submitter:
Drew Parsons
Date:
2022-05-31 07:51:10 UTC
Severity:
normal
Tags:
#1008726#5
Date:
2022-03-31 09:02:49 UTC
From:
To:
Not clear why apbs starting locking when finishing tests (Bug#1006382).
My workaround was to just upgrade to the latest apbs 3.4.

But apbs 3.4 now *requires* FETK.  This can be easily added in-source
(in the longer term it should probably be packaged separately).
The problem is that it is configured to pull a local copy of superlu.
Debian policy is to use system libraries where possible.

The problem has been raised already upstream at
https://github.com/Electrostatics/FETK/issues/62

#1008726#14
Date:
2022-05-31 07:30:15 UTC
From:
To:
Hello,

Bug #1008726 in apbs reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/debichem-team/apbs/-/commit/3333cef4e753adaee7887668ed6708cc966f474e
------------------------------------------------------------------------
upload 3.4.1-2 to unstable

FETK is now provided (built against system SuperLU),
and debci tests pass.

Closes: #1006382, #1008726.
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1008726

#1008726#21
Date:
2022-05-31 07:49:07 UTC
From:
To:
We believe that the bug you reported is fixed in the latest version of
apbs, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1008726@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Drew Parsons <dparsons@debian.org> (supplier of updated apbs package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Tue, 31 May 2022 02:52:47 +0200
Source: apbs
Architecture: source
Version: 3.4.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Changed-By: Drew Parsons <dparsons@debian.org>
Closes: 979339 1006382 1008726
Changes:
 apbs (3.4.1-2) unstable; urgency=medium
 .
   * Team upload.
   * Build-Depends-Indep: python3-yaml (to build docs)
   * add specific copyright entries for FETK components
     punc/src/pmg (GPL) and punc/src/vf2c (AT&T)
   * patch FETK punc component vf2c/uninit.c to not run __mips block on
     linux
   * don't double-up bin dir in path for apbs tools. Closes: #979339.
   * debian/rules: run build-time tests after dh_auto_install
   * FETK is now provided (built against system SuperLU), and debci
     tests pass. Closes: #1006382, #1008726.
Checksums-Sha1:
 3e73492bbe130f6525c0950512f2b399cbdaceda 2639 apbs_3.4.1-2.dsc
 9aa10d8ef734ac5ee65538f9207220548b3afed3 20287852 apbs_3.4.1-2.debian.tar.xz
Checksums-Sha256:
 dc4c8d42b8e3db875bb195a630eb10c065af8e5b4167674f6c858f9ac2c3e485 2639 apbs_3.4.1-2.dsc
 66c7f9549abeb20cd76f3b1d80f1dc85a809559d15fcb5e00bc6937be1eeb0e0 20287852 apbs_3.4.1-2.debian.tar.xz
Files:
 373fdfab5204e5e7da4a044295dc35d3 2639 science optional apbs_3.4.1-2.dsc
 74b2b3406bc62b43bcdbd0c09042125f 20287852 science optional apbs_3.4.1-2.debian.tar.xz
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