#1009159 kmerresistance: Add autopkgtest

Package:
kmerresistance
Source:
kmerresistance
Description:
correlates mapped genes with the predicted species of WGS samples
Submitter:
Nilesh Patra
Date:
2023-10-09 12:27:02 UTC
Severity:
wishlist
Tags:
#1009159#5
Date:
2022-04-07 21:16:33 UTC
From:
To:
Hi,

Please add autopkgtests for kmerresistance.

Regards,
Nilesh
#1009159#10
Date:
2023-10-05 09:53:06 UTC
From:
To:
Hello,
Pleas find attached a patch for Bug#1009159.
#1009159#15
Date:
2023-10-05 17:25:28 UTC
From:
To:
Thanks for the patch, but this looks wrong since it does not do anything other
than printing out a help menu.
We would like to actually test the binary for some data and verify whether output
is correct.

Also, it seems to even return a non-zero exit code and fails its testsuite
in current scenario. Did you run the autopkgtests before submitting it?

autopkgtest [22:37:50]: test run-unit-test: [-----------------------
# Too few arguments handed
# Printing help message:
# KmerResistance-2.0 correlates genes to species from WGS data, by mapping reads with KMA
# Options are:          Desc:                           Default:                Requirements:
#
#       -i              Input/query file name                                   REQUIRED
#       -o              Output file                                             REQUIRED
#       -t_db           Template DB                                             REQUIRED
#       -s_db           Species DB                                              REQUIRED
#       -id             ID threshhold                   70.0
#       -hid            Hard ID threshhold                      1.0
#       -dct            Depth correction threshhold     0.1
#       -kma            alternative KMA         kma
#       -v              Version
#       -h              Shows this help message
#
autopkgtest [22:37:51]: test run-unit-test: -----------------------]
autopkgtest [22:37:51]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
run-unit-test        FAIL non-zero exit status 1
autopkgtest [22:37:51]: @@@@@@@@@@@@@@@@@@@@ summary
run-unit-test        FAIL non-zero exit status 1
#1009159#20
Date:
2023-10-09 12:24:24 UTC
From:
To:
Update on patch.