Dear Maintainer,

I noticed that snakemake-modes tests were failing while I was trying to build
the package.

Eventually I found that running the snakemake executable was failing with
python 3.11, but worked with 3.10.

Using the test Snakefile from snakemake-mode for the tests I ran the command
with both python3.11 and python3.10. The results are below.

I should probably go try to package the throttle library and upload it to NEW.

Snakemake's upstream patched snakemake to use a different library throttle in
https://github.com/snakemake/snakemake/issues/1952

$ python3.11 /usr/bin/snakemake --dryrun aa.out
Building DAG of jobs...
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/snakemake/__init__.py", line 730, in
snakemake
    success = workflow.execute(
              ^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/snakemake/workflow.py", line 942, in
execute
    self.scheduler = JobScheduler(
                     ^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/snakemake/scheduler.py", line 105, in
__init__
    from ratelimiter import RateLimiter
  File "/usr/lib/python3/dist-packages/ratelimiter.py", line 36, in <module>
    class RateLimiter(object):
  File "/usr/lib/python3/dist-packages/ratelimiter.py", line 127, in
RateLimiter
    __aexit__ = asyncio.coroutine(__exit__)
                ^^^^^^^^^^^^^^^^^
AttributeError: module 'asyncio' has no attribute 'coroutine'

$ python3.10 -Wd /usr/bin/snakemake --dryrun aa.out
Building DAG of jobs...
/usr/lib/python3/dist-packages/ratelimiter.py:127: DeprecationWarning:
"@coroutine" decorator is deprecated since Python 3.8, use "async def" instead
  __aexit__ = asyncio.coroutine(__exit__)
Job stats:
job      count    min threads    max threads
-----  -------  -------------  -------------
aa           1              1              1
total        1              1              1


[Sat Jan  7 19:56:59 2023]
rule aa:
    output: aa.out
    jobid: 0
    reason: Missing output files: aa.out
    resources: tmpdir=/tmp

Job stats:
job      count    min threads    max threads
-----  -------  -------------  -------------
aa           1              1              1
total        1              1              1

Reasons:
    (check individual jobs above for details)
    missing output files:
        aa

This was a dry-run (flag -n). The order of jobs does not reflect the order of
execution.
/usr/lib/python3.10/tempfile.py:999: ResourceWarning: Implicitly cleaning up
<TemporaryDirectory '/home/diane/.cache/snakemake/snakemake/source-
cache/runtime-cache/tmplqpvu6li'>
  _warnings.warn(warn_message, ResourceWarning)

We believe that the bug you reported is fixed in the latest version of
python-ratelimiter, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1028175@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Diane Trout <diane@ghic.org> (supplier of updated python-ratelimiter package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Sat, 07 Jan 2023 22:26:05 -0800
Source: python-ratelimiter
Architecture: source
Version: 1.2.0.post0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Team <team+python@tracker.debian.org>
Changed-By: Diane Trout <diane@ghic.org>
Closes: 1025119 1028175
Changes:
 python-ratelimiter (1.2.0.post0-4) unstable; urgency=medium
 .
   * Add debian/patches/use-async-keyword.patch
     - Makes package compatible with Python 3.11 Closes: #1025119
       Closes: #1028175
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 fe57af82a377f27b6d0111c2a7e505e3b3bf85c0 3704 python-ratelimiter_1.2.0.post0-4.debian.tar.xz
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Checksums-Sha256:
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