#1047324 kallisto: Fails to build source after successful build

#1047324#5
Date:
2023-08-13 19:20:49 UTC
From:
To:
Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/kallisto_0.48.0+dfsg-4_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

#1047324#10
Date:
2025-10-18 09:54:48 UTC
From:
To:
Hello,

Bug #1047324 in kallisto reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/kallisto/-/commit/f63744bf6b12a99e30e261f2e8e4d1ef42e655a2

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1047324

#1047324#19
Date:
2026-02-22 16:18:43 UTC
From:
To:
We believe that the bug you reported is fixed in the latest version of
kallisto, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1047324@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated kallisto package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Sun, 22 Feb 2026 17:01:24 +0100
Source: kallisto
Architecture: source
Version: 0.51.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Closes: 1047324 1057131 1113067
Changes:
 kallisto (0.51.1+dfsg-1) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * New upstream version
   * Standards-Version: 4.7.3
   * Add support for loongarch64 in d/control
     Closes: #1057131
   * Remove patch Check_busOptions.seq_length_before_accessing.patch that is
     missing from debian/patches/series.
   * Fix build with CMake 4
     Closes: #1113067
   * d/watch: version=5
   * Cleanup properly after build time test + fix clean target
     Closes: #1047324
   * debputy lint --auto-fix (routine-update)
   * Try hard to get bifrost build with recent gcc
   * bifrost: Add default values for MAX_KMER_SIZE and MAX_GMER_SIZE
   * Fix typo in bifrost
   * Do not build in parallel
 .
   [ Michael R. Crusoe ]
   * d/control: simplify architecture specifications by using provisions
     from the architecture-properties package.
   * d/rules: change dh_auto_test rule from an override to an
     execute_after to remove the need to check DEB_BUILD_OPTIONS.
   * Upstream has forked bifrost, use their copy instead.
   * d/rules: need cmake option needed: USE_BAM.
Checksums-Sha1:
 014993c21e97f13ba42b55c9a968e91944b5d08d 2181 kallisto_0.51.1+dfsg-1.dsc
 b5d92f1d0b7d0cba7c8e397018323baeb1674b17 3461412 kallisto_0.51.1+dfsg.orig.tar.xz
 6a6c0092828270d0c221d36fcec15b60f8266e96 8772 kallisto_0.51.1+dfsg-1.debian.tar.xz
 954d5de45380f0fb9e70bb3ec344ce7b12bdfc95 11789 kallisto_0.51.1+dfsg-1_amd64.buildinfo
Checksums-Sha256:
 183f4e71a6eb932aa8ccda1da936784de0cec75df09a3e6df575c18e65027933 2181 kallisto_0.51.1+dfsg-1.dsc
 b2cd5537f4f4d59b13b25f5be4777e181985ffc667bdd5c657339a9ce7d188cf 3461412 kallisto_0.51.1+dfsg.orig.tar.xz
 b382be5679178f6d5b04fdd0f08ebd627f60403695cb5027d7d743b8406cbb4e 8772 kallisto_0.51.1+dfsg-1.debian.tar.xz
 4e9ea2b577c9dc1bcef39152bdc62cd883750535ad7dd05a38974d771d707b57 11789 kallisto_0.51.1+dfsg-1_amd64.buildinfo
Files:
 3b8a8ccc9b8698eebe1f13c8dfc1b22b 2181 science optional kallisto_0.51.1+dfsg-1.dsc
 ee6e2c7e7e365b7095cdf09a8ca7e1e6 3461412 science optional kallisto_0.51.1+dfsg.orig.tar.xz
 b95c32efbfd615ebcd7b8309c4f1dbb8 8772 science optional kallisto_0.51.1+dfsg-1.debian.tar.xz
 e23e3ad9a6e8c73d6482289d20aff769 11789 science optional kallisto_0.51.1+dfsg-1_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----
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=ITav
-----END PGP SIGNATURE-----