- Package:
- src:python-pybedtools
- Source:
- src:python-pybedtools
- Submitter:
- Lucas Nussbaum
- Date:
- 2026-03-02 19:07:01 UTC
- Severity:
- normal
- Tags:
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: The full build log is available from: http://qa-logs.debian.net/2023/08/13/python-pybedtools_0.9.0-4_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
Hello, Bug #1048006 in python-pybedtools reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/python-pybedtools/-/commit/e4ef8236e097329b232698fd8c951ff78d9eafeb (this message was generated automatically) -- Greetings https://bugs.debian.org/1048006
We believe that the bug you reported is fixed in the latest version of
python-pybedtools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1048006@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Lance Lin <lq27267@gmail.com> (supplier of updated python-pybedtools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Fri, 27 Oct 2023 19:35:26 +0700
Source: python-pybedtools
Architecture: source
Version: 0.9.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Lance Lin <lq27267@gmail.com>
Closes: 1042651 1048006
Changes:
python-pybedtools (0.9.1-1) unstable; urgency=medium
.
[ Lance Lin ]
* Team upload.
* New upstream version
* d/control: Replace autopkgtest-pkg-python with autopkgtest-pkg-pybuild
* d/rules:
- Enable build tests
- Deselect test_chromsizes test, needs internet
- Build docs with sphinx-build for Sphinx 7.1 (Closes: #1042651)
- Remove autogenerated files from build
* d/python-pybedtools-doc.docs: Change sphinx docs location
* d/source/options: Ignore modified source files (Closes: #1048006)
* d/patches/yaml_safe_load.patch: Modify safe_load for full_load where needed
.
[ Andreas Tille ]
* Remove unknown files in python module directory
* Testsuite: autopkgtest-pkg-python (routine-update)
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
* Remove field Testsuite on binary package python-pybedtools-doc that
duplicates source.
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Hello, Bug #1048006 in python-pybedtools reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/python-pybedtools/-/commit/aeb30b71d85942e3629c9214b81782bf44d0d1c8 (this message was generated automatically) -- Greetings https://bugs.debian.org/1048006
We believe that the bug you reported is fixed in the latest version of python-pybedtools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1048006@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Santiago Vila <sanvila@debian.org> (supplier of updated python-pybedtools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmaster@ftp-master.debian.org) Format: 1.8 Date: Mon, 02 Mar 2026 19:30:00 +0100 Source: python-pybedtools Architecture: source Version: 0.10.0-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Santiago Vila <sanvila@debian.org> Closes: 1048006 Changes: python-pybedtools (0.10.0-6) unstable; urgency=medium . * Team upload. * Fix clean target. Closes: #1048006. * Drop DH_VERBOSE, leftover from initial release. * Update standards-version. * Simplify salsa-ci.yml. Checksums-Sha1: 09a8f239bc1f81ce7434e05ea3c004c522a745f7 2243 python-pybedtools_0.10.0-6.dsc 9c1ee5c0c56f19eb53caaadaef95a3ddb6f9f322 33440 python-pybedtools_0.10.0-6.debian.tar.xz f5f66e8379392211db8d7728fe933b6881384fd4 4715 python-pybedtools_0.10.0-6_source.buildinfo Checksums-Sha256: d34b90dca58cf14b7ec2ad09ee8508f648d86c6035c1016f063256872e167f3b 2243 python-pybedtools_0.10.0-6.dsc d37e93f9d110c06a54b7b2a082ce43148abccf9f127d60ac79fa2ea1b98f5e8b 33440 python-pybedtools_0.10.0-6.debian.tar.xz 5c08f5f91e1af7e220fa3ffd7f4cb522ee6d049c9168524961048325997ed393 4715 python-pybedtools_0.10.0-6_source.buildinfo Files: 97bb823fb834b39d177eaa3a6370a386 2243 python optional python-pybedtools_0.10.0-6.dsc 42f033957babb3bda509a35ae2669ced 33440 python optional python-pybedtools_0.10.0-6.debian.tar.xz 009f083869d6af84183c68009021aa45 4715 python optional python-pybedtools_0.10.0-6_source.buildinfo -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEE1Uw7+v+wQt44LaXXQc5/C58bizIFAmml2XQACgkQQc5/C58b izK66wf/RNPLCWCyI2wDjXm21n5lAL3mAnd+DKFM/b3/GZqEODjENI9y0SBUuYre Xhtvc5R7vAYMdGGstVPYxxAQZV+i2gVYCDOFIrzFZe25EHoMeINeULM0VWzB0Fgz KGEziypWkzffRSYyoOpUHFc/x5JxBJw7eU6O6aEiFaWbgJMHArurIUrBChdN6kl+ Nfz630r2AZaaX4em97TMcwigqlrmatwYFUA4XlEi7BmrJJOTfsd7QG09nXA1WQgx QtYLIgP8jo6xY7YfTgq/fYzcRXh7DQYI6hDrorjPK/3rv4rL2Pzswym6WSCgOOtL 4Kep4MNyDt5zAn4lyMzbiXChiE1IVQ== =SIWh -----END PGP SIGNATURE-----