- Package:
- src:lamassemble
- Source:
- src:lamassemble
- Submitter:
- Matthias Klose
- Date:
- 2024-02-26 15:54:05 UTC
- Severity:
- normal
- Tags:
With python3-defaults from experimental, the package fails its autopkg tests: [...] can't see anything meaningful in the test log https://autopkgtest.ubuntu.com/results/autopkgtest-noble/noble/amd64/l/lamassemble/20240126_134143_244d5@/log.gz
We believe that the bug you reported is fixed in the latest version of
lamassemble, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1061806@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated lamassemble package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Wed, 07 Feb 2024 18:44:18 +0100
Source: lamassemble
Architecture: source
Version: 1.7.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Closes: 1061806
Changes:
lamassemble (1.7.0-2) unstable; urgency=medium
.
* Team upload.
* For whatever reason the string
lamassemble: using 2 out of 3 sequences
does not appear in the output any more when using Python3.12.
Since this seems to be irrelevant this string is removed.
Closes: #1061806
Checksums-Sha1:
23a7c5cc86ad73a89c36052711d4c53e22d825ac 2127 lamassemble_1.7.0-2.dsc
e370bc64fa9eefc1e137e982a180abdaa3f5603a 125168 lamassemble_1.7.0-2.debian.tar.xz
5ee16feb8b2b971bbeaf4cfda2d0d49ec4f69d02 7177 lamassemble_1.7.0-2_amd64.buildinfo
Checksums-Sha256:
ac7472987f27e0985902ab3614e154c3987712ee91130919f9c85656dc277bf6 2127 lamassemble_1.7.0-2.dsc
f663be7bf9078f95a0414d5cbc855053273e4a819958569c4a82abf0b6c5dd46 125168 lamassemble_1.7.0-2.debian.tar.xz
46fbaa9154d21bdff7d954e817ad73a48d47557cfb048940aff37d163029eccc 7177 lamassemble_1.7.0-2_amd64.buildinfo
Files:
d8f2e1dd753296b1f0e31ce1baad519f 2127 science optional lamassemble_1.7.0-2.dsc
a6b604d2f982c48a94846d0218660dcf 125168 science optional lamassemble_1.7.0-2.debian.tar.xz
cdafbc77683c9092012150950b2fb07f 7177 science optional lamassemble_1.7.0-2_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=BWko
-----END PGP SIGNATURE-----
please see the tests triggered by python3-defaults. Not pasting these here in the bug report. https://autopkgtest.ubuntu.com/packages/l/lamassemble/noble/amd64
Hi Martin, doko: Would you be able to assist with this bug report? https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1061806 Here's the test script we use for lamassemble https://salsa.debian.org/med-team/lamassemble/-/blob/master/debian/tests/run-unit-test?ref_type=heads Best, Nilesh
Hi Nilesh, thank you for reporting this issue. I've just made an update to lamassemble, which may solve it, but I'm not certain. The output of lamassemble's tests changes when using MAFFT version >= 7.514. So I updated the test outputs to fit the latest MAFFT. I hope that does it... Martin
We believe that the bug you reported is fixed in the latest version of
lamassemble, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1061806@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated lamassemble package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Mon, 26 Feb 2024 16:25:27 +0100
Source: lamassemble
Architecture: source
Version: 1.7.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Closes: 1061806
Changes:
lamassemble (1.7.1-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
Closes: #1061806
Checksums-Sha1:
298cb85d38686639e9eb425129923a0c1c6fe057 2127 lamassemble_1.7.1-1.dsc
ca37f393d1f574239232deba030c3b9795306d6f 25507 lamassemble_1.7.1.orig.tar.gz
347641c84137c4a3ef4d9df9295dab806fd59f0d 125352 lamassemble_1.7.1-1.debian.tar.xz
f2eddfb733cd4215280c394b69be1d94c3fa488c 7217 lamassemble_1.7.1-1_amd64.buildinfo
Checksums-Sha256:
300c2fb340d1304c02847ad7b6e9aa227aa8749a06b1c2872d149e9db1d92c86 2127 lamassemble_1.7.1-1.dsc
74c3965c33d1e8807ff4d7b90b55630e1bf7a2485e1d58615b1ed377958ad6c6 25507 lamassemble_1.7.1.orig.tar.gz
c456d302fd24068279e95c59f762292922c9a4d94a45573b64fb673c726f1ce7 125352 lamassemble_1.7.1-1.debian.tar.xz
66eb7251508a70ffe84cc56661bdeed6de3ea6cf3f4e9c63f9dbf4d933ff59d7 7217 lamassemble_1.7.1-1_amd64.buildinfo
Files:
120550d6d93a60cb2785650d829f23c6 2127 science optional lamassemble_1.7.1-1.dsc
4ffb806023694dc1845246e5c101c0b2 25507 science optional lamassemble_1.7.1.orig.tar.gz
646d29b726c119b1635dc72e8032515f 125352 science optional lamassemble_1.7.1-1.debian.tar.xz
4eb457b3dac7ffa1632c080f8c87efa7 7217 science optional lamassemble_1.7.1-1_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=afqz
-----END PGP SIGNATURE-----