Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running config
I: pybuild base:311: python3.12 setup.py config
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
sed -i "s/^__version__.*/__version__ = '0.5.11'/" pynndescent/__init__.py
dh_auto_build
I: pybuild base:311: /usr/bin/python3.13 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
copying pynndescent/sparse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
copying pynndescent/distances.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
copying pynndescent/rp_trees.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
copying pynndescent/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
copying pynndescent/graph_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
copying pynndescent/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
copying pynndescent/sparse_nndescent.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
copying pynndescent/threaded_rp_trees.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
copying pynndescent/pynndescent_.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
copying pynndescent/optimal_transport.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
copying pynndescent/sparse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
copying pynndescent/distances.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
copying pynndescent/rp_trees.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
copying pynndescent/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
copying pynndescent/graph_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
copying pynndescent/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
copying pynndescent/sparse_nndescent.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
copying pynndescent/threaded_rp_trees.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
copying pynndescent/pynndescent_.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
copying pynndescent/optimal_transport.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build/pynndescent
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test -- --system=custom --test-args="PYTHONPATH={build_dir} {interpreter} -m pytest -v /<<PKGBUILDDIR>>/pynndescent/tests"
I: pybuild base:311: PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build python3.13 -m pytest -v /<<PKGBUILDDIR>>/pynndescent/tests
ImportError while loading conftest '/<<PKGBUILDDIR>>/pynndescent/tests/conftest.py'.
pynndescent/__init__.py:3: in <module>
import numba
/usr/lib/python3/dist-packages/numba/__init__.py:74: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:11: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E --------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work, you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E --------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was: 'cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
E: pybuild pybuild:389: test: plugin custom failed with: exit code=4: PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build python3.13 -m pytest -v /<<PKGBUILDDIR>>/pynndescent/tests
I: pybuild base:311: PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynndescent/build python3.12 -m pytest -v /<<PKGBUILDDIR>>/pynndescent/tests
============================= test session starts ==============================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12
cachedir: .pytest_cache
rootdir: /<<PKGBUILDDIR>>
plugins: typeguard-4.4.1
collecting ... collected 143 items
pynndescent/tests/test_distances.py::test_spatial_check[euclidean] PASSED [ 0%]
pynndescent/tests/test_distances.py::test_spatial_check[manhattan] PASSED [ 1%]
pynndescent/tests/test_distances.py::test_spatial_check[chebyshev] PASSED [ 2%]
pynndescent/tests/test_distances.py::test_spatial_check[minkowski] PASSED [ 2%]
pynndescent/tests/test_distances.py::test_spatial_check[hamming] PASSED [ 3%]
pynndescent/tests/test_distances.py::test_spatial_check[canberra] PASSED [ 4%]
pynndescent/tests/test_distances.py::test_spatial_check[braycurtis] PASSED [ 4%]
pynndescent/tests/test_distances.py::test_spatial_check[cosine] PASSED [ 5%]
pynndescent/tests/test_distances.py::test_spatial_check[correlation] PASSED [ 6%]
pynndescent/tests/test_distances.py::test_binary_check[jaccard] PASSED [ 6%]
pynndescent/tests/test_distances.py::test_binary_check[matching] PASSED [ 7%]
pynndescent/tests/test_distances.py::test_binary_check[dice] PASSED [ 8%]
pynndescent/tests/test_distances.py::test_binary_check[rogerstanimoto] PASSED [ 9%]
pynndescent/tests/test_distances.py::test_binary_check[russellrao] PASSED [ 9%]
pynndescent/tests/test_distances.py::test_binary_check[sokalmichener] PASSED [ 10%]
pynndescent/tests/test_distances.py::test_binary_check[sokalsneath] PASSED [ 11%]
pynndescent/tests/test_distances.py::test_binary_check[yule] PASSED [ 11%]
pynndescent/tests/test_distances.py::test_sparse_spatial_check[euclidean] PASSED [ 12%]
pynndescent/tests/test_distances.py::test_sparse_spatial_check[manhattan] PASSED [ 13%]
pynndescent/tests/test_distances.py::test_sparse_spatial_check[chebyshev] PASSED [ 13%]
pynndescent/tests/test_distances.py::test_sparse_spatial_check[minkowski] PASSED [ 14%]
pynndescent/tests/test_distances.py::test_sparse_spatial_check[hamming] PASSED [ 15%]
pynndescent/tests/test_distances.py::test_sparse_spatial_check[canberra] PASSED [ 16%]
pynndescent/tests/test_distances.py::test_sparse_spatial_check[cosine] PASSED [ 16%]
pynndescent/tests/test_distances.py::test_sparse_spatial_check[braycurtis] PASSED [ 17%]
pynndescent/tests/test_distances.py::test_sparse_spatial_check[correlation] PASSED [ 18%]
pynndescent/tests/test_distances.py::test_sparse_binary_check[jaccard] PASSED [ 18%]
pynndescent/tests/test_distances.py::test_sparse_binary_check[matching] PASSED [ 19%]
pynndescent/tests/test_distances.py::test_sparse_binary_check[dice] PASSED [ 20%]
pynndescent/tests/test_distances.py::test_sparse_binary_check[rogerstanimoto] PASSED [ 20%]
pynndescent/tests/test_distances.py::test_sparse_binary_check[russellrao] PASSED [ 21%]
pynndescent/tests/test_distances.py::test_sparse_binary_check[sokalmichener] PASSED [ 22%]
pynndescent/tests/test_distances.py::test_sparse_binary_check[sokalsneath] PASSED [ 23%]
pynndescent/tests/test_distances.py::test_seuclidean PASSED [ 23%]
pynndescent/tests/test_distances.py::test_weighted_minkowski SKIPPED [ 24%]
pynndescent/tests/test_distances.py::test_mahalanobis PASSED [ 25%]
pynndescent/tests/test_distances.py::test_haversine PASSED [ 25%]
pynndescent/tests/test_distances.py::test_spearmanr PASSED [ 26%]
pynndescent/tests/test_distances.py::test_alternative_distances PASSED [ 27%]
pynndescent/tests/test_distances.py::test_jensen_shannon PASSED [ 27%]
pynndescent/tests/test_distances.py::test_sparse_jensen_shannon PASSED [ 28%]
pynndescent/tests/test_distances.py::test_wasserstein_1d[1.0] PASSED [ 29%]
pynndescent/tests/test_distances.py::test_wasserstein_1d[2.0] PASSED [ 30%]
pynndescent/tests/test_distances.py::test_wasserstein_1d[3.0] PASSED [ 30%]
pynndescent/tests/test_distances.py::test_wasserstein_1d[0.5] PASSED [ 31%]
pynndescent/tests/test_pynndescent_.py::test_nn_descent_neighbor_accuracy PASSED [ 32%]
pynndescent/tests/test_pynndescent_.py::test_angular_nn_descent_neighbor_accuracy PASSED [ 32%]
pynndescent/tests/test_pynndescent_.py::test_sparse_nn_descent_neighbor_accuracy PASSED [ 33%]
pynndescent/tests/test_pynndescent_.py::test_sparse_angular_nn_descent_neighbor_accuracy PASSED [ 34%]
pynndescent/tests/test_pynndescent_.py::test_nn_descent_query_accuracy PASSED [ 34%]
pynndescent/tests/test_pynndescent_.py::test_nn_descent_query_accuracy_angular PASSED [ 35%]
pynndescent/tests/test_pynndescent_.py::test_sparse_nn_descent_query_accuracy PASSED [ 36%]
pynndescent/tests/test_pynndescent_.py::test_sparse_nn_descent_query_accuracy_angular PASSED [ 37%]
pynndescent/tests/test_pynndescent_.py::test_transformer_equivalence PASSED [ 37%]
pynndescent/tests/test_pynndescent_.py::test_random_state_none PASSED [ 38%]
pynndescent/tests/test_pynndescent_.py::test_deterministic PASSED [ 39%]
pynndescent/tests/test_pynndescent_.py::test_rp_trees_should_not_stack_overflow_with_duplicate_data PASSED [ 39%]
pynndescent/tests/test_pynndescent_.py::test_deduplicated_data_behaves_normally PASSED [ 40%]
pynndescent/tests/test_pynndescent_.py::test_rp_trees_should_not_stack_overflow_with_near_duplicate_data PASSED [ 41%]
pynndescent/tests/test_pynndescent_.py::test_output_when_verbose_is_true PASSED [ 41%]
pynndescent/tests/test_pynndescent_.py::test_no_output_when_verbose_is_false PASSED [ 42%]
pynndescent/tests/test_pynndescent_.py::test_transformer_output_when_verbose_is_true PASSED [ 43%]
pynndescent/tests/test_pynndescent_.py::test_transformer_output_when_verbose_is_false PASSED [ 44%]
pynndescent/tests/test_pynndescent_.py::test_pickle_unpickle PASSED [ 44%]
pynndescent/tests/test_pynndescent_.py::test_compressed_pickle_unpickle PASSED [ 45%]
pynndescent/tests/test_pynndescent_.py::test_transformer_pickle_unpickle PASSED [ 46%]
pynndescent/tests/test_pynndescent_.py::test_joblib_dump PASSED [ 46%]
pynndescent/tests/test_pynndescent_.py::test_update_no_prepare_query_accuracy[euclidean] PASSED [ 47%]
pynndescent/tests/test_pynndescent_.py::test_update_no_prepare_query_accuracy[cosine] PASSED [ 48%]
pynndescent/tests/test_pynndescent_.py::test_update_w_prepare_query_accuracy[euclidean] PASSED [ 48%]
pynndescent/tests/test_pynndescent_.py::test_update_w_prepare_query_accuracy[cosine] PASSED [ 49%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[0-manhattan] PASSED [ 50%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[0-euclidean] PASSED [ 51%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[0-cosine] PASSED [ 51%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[1-manhattan] PASSED [ 52%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[1-euclidean] PASSED [ 53%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[1-cosine] PASSED [ 53%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[2-manhattan] PASSED [ 54%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[2-euclidean] PASSED [ 55%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[2-cosine] PASSED [ 55%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[3-manhattan] PASSED [ 56%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[3-euclidean] PASSED [ 57%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[3-cosine] PASSED [ 58%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[4-manhattan] PASSED [ 58%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[4-euclidean] PASSED [ 59%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[4-cosine] PASSED [ 60%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[5-manhattan] PASSED [ 60%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[5-euclidean] PASSED [ 61%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[5-cosine] PASSED [ 62%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[6-manhattan] PASSED [ 62%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[6-euclidean] PASSED [ 63%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[6-cosine] PASSED [ 64%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[7-manhattan] PASSED [ 65%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[7-euclidean] PASSED [ 65%]
pynndescent/tests/test_pynndescent_.py::test_update_with_changed_data[7-cosine] PASSED [ 66%]
pynndescent/tests/test_pynndescent_.py::test_tree_numbers_after_multiple_updates[1] PASSED [ 67%]
pynndescent/tests/test_pynndescent_.py::test_tree_numbers_after_multiple_updates[2] PASSED [ 67%]
pynndescent/tests/test_pynndescent_.py::test_tree_numbers_after_multiple_updates[3] PASSED [ 68%]
pynndescent/tests/test_pynndescent_.py::test_tree_numbers_after_multiple_updates[10] PASSED [ 69%]
pynndescent/tests/test_pynndescent_.py::test_tree_init_false[euclidean] PASSED [ 69%]
pynndescent/tests/test_pynndescent_.py::test_tree_init_false[cosine] PASSED [ 70%]
pynndescent/tests/test_pynndescent_.py::test_one_dimensional_data[euclidean] PASSED [ 71%]
pynndescent/tests/test_pynndescent_.py::test_one_dimensional_data[manhattan] PASSED [ 72%]
pynndescent/tests/test_pynndescent_.py::test_tree_no_split[euclidean] PASSED [ 72%]
pynndescent/tests/test_pynndescent_.py::test_tree_no_split[cosine] PASSED [ 73%]
pynndescent/tests/test_pynndescent_.py::test_bad_data PASSED [ 74%]
pynndescent/tests/test_rank.py::test_empty PASSED [ 74%]
pynndescent/tests/test_rank.py::test_one PASSED [ 75%]
pynndescent/tests/test_rank.py::test_basic PASSED [ 76%]
pynndescent/tests/test_rank.py::test_rankdata_object_string PASSED [ 76%]
pynndescent/tests/test_rank.py::test_large_int PASSED [ 77%]
pynndescent/tests/test_rank.py::test_big_tie PASSED [ 78%]
pynndescent/tests/test_rank.py::test_cases[values0-average-expected0] PASSED [ 79%]
pynndescent/tests/test_rank.py::test_cases[values1-min-expected1] PASSED [ 79%]
pynndescent/tests/test_rank.py::test_cases[values2-max-expected2] PASSED [ 80%]
pynndescent/tests/test_rank.py::test_cases[values3-dense-expected3] PASSED [ 81%]
pynndescent/tests/test_rank.py::test_cases[values4-ordinal-expected4] PASSED [ 81%]
pynndescent/tests/test_rank.py::test_cases[values5-average-expected5] PASSED [ 82%]
pynndescent/tests/test_rank.py::test_cases[values6-min-expected6] PASSED [ 83%]
pynndescent/tests/test_rank.py::test_cases[values7-max-expected7] PASSED [ 83%]
pynndescent/tests/test_rank.py::test_cases[values8-dense-expected8] PASSED [ 84%]
pynndescent/tests/test_rank.py::test_cases[values9-ordinal-expected9] PASSED [ 85%]
pynndescent/tests/test_rank.py::test_cases[values10-average-expected10] PASSED [ 86%]
pynndescent/tests/test_rank.py::test_cases[values11-min-expected11] PASSED [ 86%]
pynndescent/tests/test_rank.py::test_cases[values12-max-expected12] PASSED [ 87%]
pynndescent/tests/test_rank.py::test_cases[values13-dense-expected13] PASSED [ 88%]
pynndescent/tests/test_rank.py::test_cases[values14-ordinal-expected14] PASSED [ 88%]
pynndescent/tests/test_rank.py::test_cases[values15-average-expected15] PASSED [ 89%]
pynndescent/tests/test_rank.py::test_cases[values16-min-expected16] PASSED [ 90%]
pynndescent/tests/test_rank.py::test_cases[values17-max-expected17] PASSED [ 90%]
pynndescent/tests/test_rank.py::test_cases[values18-dense-expected18] PASSED [ 91%]
pynndescent/tests/test_rank.py::test_cases[values19-ordinal-expected19] PASSED [ 92%]
pynndescent/tests/test_rank.py::test_cases[values20-average-expected20] PASSED [ 93%]
pynndescent/tests/test_rank.py::test_cases[values21-min-expected21] PASSED [ 93%]
pynndescent/tests/test_rank.py::test_cases[values22-max-expected22] PASSED [ 94%]
pynndescent/tests/test_rank.py::test_cases[values23-dense-expected23] PASSED [ 95%]
pynndescent/tests/test_rank.py::test_cases[values24-ordinal-expected24] PASSED [ 95%]
pynndescent/tests/test_rank.py::test_cases[values25-average-expected25] PASSED [ 96%]
pynndescent/tests/test_rank.py::test_cases[values26-min-expected26] PASSED [ 97%]
pynndescent/tests/test_rank.py::test_cases[values27-max-expected27] PASSED [ 97%]
pynndescent/tests/test_rank.py::test_cases[values28-dense-expected28] PASSED [ 98%]
pynndescent/tests/test_rank.py::test_cases[values29-ordinal-expected29] PASSED [ 99%]
pynndescent/tests/test_rank.py::test_cases[values30-ordinal-expected30] PASSED [100%]
================== 142 passed, 1 skipped in 196.44s (0:03:16) ==================
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13 3.12" --system=custom "--test-args=PYTHONPATH={build_dir} {interpreter} -m pytest -v /<<PKGBUILDDIR>>/pynndescent/tests" returned exit code 13
make[1]: *** [debian/rules:18: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:9: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202412/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.