- Package:
- libhtsjdk-java
- Source:
- libhtsjdk-java
- Submitter:
- Santiago Vila
- Date:
- 2024-12-30 11:09:04 UTC
- Severity:
- normal
- Tags:
Dear maintainer: During a rebuild of all packages in unstable, your package failed to build: -------------------------------------------------------------------------------- [...] [ERROR] Failed to execute goal on project goby-io: Could not resolve dependencies for project org.campagnelab.goby:goby-io:jar:3.3.1 [ERROR] dependency: org.sharegov:mjson:jar:debian (compile) [ERROR] Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.sharegov:mjson:jar:debian has not been downloaded from it before. [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <args> -rf :goby-io dh_auto_build: error: /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/<<BUILDDIR>>/libgoby-java-3.3.1\+dfsg2 -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<BUILDDIR>>/libgoby-java-3.3.1\+dfsg2/debian -Dmaven.repo.local=/<<BUILDDIR>>/libgoby-java-3.3.1\+dfsg2/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US returned exit code 1 make: *** [debian/rules:6: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202412/ Note: You can reproduce this easily by trying to build the package using sbuild unshare backend. About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
We believe that the bug you reported is fixed in the latest version of htsjdk, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1091589@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Pierre Gruet <pgt@debian.org> (supplier of updated htsjdk package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmaster@ftp-master.debian.org) Format: 1.8 Date: Mon, 30 Dec 2024 10:33:32 +0100 Source: htsjdk Architecture: source Version: 4.1.3+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Pierre Gruet <pgt@debian.org> Closes: 1091589 Changes: htsjdk (4.1.3+dfsg-2) unstable; urgency=medium . * Updating the classpath of the built jar * Updating the installed POM file (Closes: #1091589) Checksums-Sha1: 3853e3d7529f8e3f3c7635aa1a9c30a3d5d2eaae 2648 htsjdk_4.1.3+dfsg-2.dsc 4218a8a24269cd52264460ecc62adee7cbe1603c 38280 htsjdk_4.1.3+dfsg-2.debian.tar.xz 079f21c24e878d3dd026987090ffcb70d261f29f 18859 htsjdk_4.1.3+dfsg-2_amd64.buildinfo Checksums-Sha256: a1c04709c8a2663d8d70b2be1c31840cc93e9e03929571f39d74e185d10f0304 2648 htsjdk_4.1.3+dfsg-2.dsc 0a6e889ee91d24b3e9d2a4b35d03b67f7cf667cd84cc25c08d6e1fa06b158b74 38280 htsjdk_4.1.3+dfsg-2.debian.tar.xz 7d2c2846c01e8cfeab20599f40ed182d4ef1c5553339df87bcebe3bc3e4b52af 18859 htsjdk_4.1.3+dfsg-2_amd64.buildinfo Files: 7fe59a07a2258f31dfe864ff68584dca 2648 science optional htsjdk_4.1.3+dfsg-2.dsc d4560ab16fc82bf09b30ad5dce1b565c 38280 science optional htsjdk_4.1.3+dfsg-2.debian.tar.xz 5ad78d62bd1b966b2905e8cda8e5d294 18859 science optional htsjdk_4.1.3+dfsg-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmdyeywACgkQYAMWptwn dHaerQ//UcKQI5wQM+ZSwyve8nxOCXsenCFmxvh8DKt2y1X91KP5mQ2NeWyWtJng o9QDwzld47D7Ll2Q8cuxftUN7XtE8nJ5H/Bnm8fiMU51ezslEy9V8a0uWMhGXoPe Wahbi4+bWuuK7Z35aOD259YVbrNayMFniO62l6jBu4yWci8nIlBLwnlu0FYlKEFK RTWeLtUnywOUOg/LaFkoUgf/Emq9edkwqsSUOGHo/3JpPZAFc2bmB/W3wTUdXfl5 PJpHCAMVbeJS2nazjF3a+wxS1xTGojeANiyrIxsMfra5oe/4xbU/+JhJ5R7XYhWa 2fcA0zzgKN7+Ph5XuyP64cxopUo8wPiB0ih5dgEqDHDI00hZi/zAuaVWDFHwUekt Cq5bTXmW1l6KVqGPDHNymbSp3Myd4JbghUe1n+81RIGMlwm2tpztWpsWUYBXXFCP J2H9WI9yfLY64v+giF3Pc+4+HD0Vh93aFtioiHNtm4OLvGU4pp4iqHgfYtc6dQFG O+GHe+OhHdjrzR1BCRKWssDehNDATERPCYEf3hbCcfNRuEeKZMItP5pmUk/pjN23 luoGUnOvWCdAOGU8gtF4Zs8YsBeRdoTCuTG85Rosh6r8YaXvgK6K3/2DKoAnJ/Bx /OsUnE2XnSmnrcWEiLnAgsqHWpgW+y3jJ0g2DA8oiXZtKotfipk= =IJED -----END PGP SIGNATURE-----