Hi,

GNU Make now has a --shuffle option that simulates non-deterministic ordering
of target prerequisites. See
https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previous
work in Debian by Santiago Vila:
https://people.debian.org/~sanvila/make-shuffle/

This package fails to build with make --shuffle=reverse.
This is likely to be caused by a missing dependency in
debian/rules or an upstream Makefile.

More information about this mass bug filing is available at
https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle

Relevant part (hopefully):
The full build log is available from:
http://qa-logs.debian.net/2025/05/05/shuffle/reverse/ltrsift_1.0.2-10_unstable_reverse.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

Hello,

Bug #1105470 in ltrsift reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/ltrsift/-/commit/8305dd64ebf715ac59594735de1fb9eb3336803b
------------------------------------------------------------------------
Fix build with make --shuffle=reverse

The object and link rules depended on the "dirs" target having run
first. Add order-only prerequisites so obj/src and bin exist before
the compiler or linker writes into them.

Closes: #1105470
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1105470

We believe that the bug you reported is fixed in the latest version of
ltrsift, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1105470@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated ltrsift package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Tue, 20 Oct 2026 20:25:55 +0200
Source: ltrsift
Binary: ltrsift ltrsift-dbgsym ltrsift-sample
Architecture: source amd64 all
Version: 1.0.2-12
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 ltrsift    - postprocessing and classification of LTR retrotransposons
 ltrsift-sample - postprocessing and classification of LTR retrotransposons (sample
Closes: 967603 1105470 1126708
Changes:
 ltrsift (1.0.2-12) unstable; urgency=medium
 .
   * Team upload.
   * d/watch: version=5
   * Standards-Version: 4.7.4 (routine-update)
   * Reflow Uploaders field (cme)
   * Port from GTK+ 2 to GTK+ 3. Closes: #967603
   * Add autopkgtest checking the GTK+ 3 port.
   * Create ltrsift-sample package containing upstream sample data to enable
     running more decent autopkgtest and enable users verifying functionality
     easily
   * Fix use-after-free when creating a project. Closes: #1126708
   * Add autopkgtest reproducing the project creation crash.
   * Fix build failure with make --shuffle=reverse by creating output
     directories before compiling and linking. Closes: #1105470
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