Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build.

Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202509/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:arb, so that this is still
visible in the BTS web page for this package.

Thanks.
--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# ARB's build system is configured with config.makefile. This file is
# created on the first run of make from config.makefile.template. We
# just use sed here to set the desired parameters:
sed -e 's/DEVELOPER := ANY/DEVELOPER := RELEASE/;'\
            -e 's/ARB_64 := 1/ARB_64 := 1/;'\
            -e 's/# DEBIAN := 1/DEBIAN := 1/;' \
             config.makefile.template > config.makefile
# config.makefile is required to run make clean, hence the dependency
# on ..._auto_configure.
/usr/bin/make clean

[... snipped ...]

+ xsltproc --output ../lib/help_html/bonds.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname bonds.xml to_html.xsl Xml/bonds.xml
+ xsltproc --output ../lib/help_html/bootstrap.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname bootstrap.xml to_html.xsl Xml/bootstrap.xml
+ xsltproc --output ../lib/help_html/branch_analysis.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname branch_analysis.xml to_html.xsl Xml/branch_analysis.xml
+ xsltproc --output ../lib/help_html/checkfield.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname checkfield.xml to_html.xsl Xml/checkfield.xml
+ xsltproc --output ../lib/help_html/chimera_check.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname chimera_check.xml to_html.xsl Xml/chimera_check.xml
+ xsltproc --output ../lib/help_html/cluster_group.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname cluster_group.xml to_html.xsl Xml/cluster_group.xml
+ xsltproc --output ../lib/help_html/color.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname color.xml to_html.xsl Xml/color.xml
+ xsltproc --output ../lib/help_html/color_props.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname color_props.xml to_html.xsl Xml/color_props.xml
+ xsltproc --output ../lib/help_html/color_props_groups.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname color_props_groups.xml to_html.xsl Xml/color_props_groups.xml
+ xsltproc --output ../lib/help_html/colorize.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname colorize.xml to_html.xsl Xml/colorize.xml
+ xsltproc --output ../lib/help_html/concatenate.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname concatenate.xml to_html.xsl Xml/concatenate.xml
+ xsltproc --output ../lib/help_html/configuration.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname configuration.xml to_html.xsl Xml/configuration.xml
+ xsltproc --output ../lib/help_html/configurations.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname configurations.xml to_html.xsl Xml/configurations.xml
+ xsltproc --output ../lib/help_html/consense_algo.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname consense_algo.xml to_html.xsl Xml/consense_algo.xml
+ xsltproc --output ../lib/help_html/consense_tree.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname consense_tree.xml to_html.xsl Xml/consense_tree.xml
+ xsltproc --output ../lib/help_html/consensus.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname consensus.xml to_html.xsl Xml/consensus.xml
+ xsltproc --output ../lib/help_html/consensus_def.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname consensus_def.xml to_html.xsl Xml/consensus_def.xml
+ xsltproc --output ../lib/help_html/count_chars.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname count_chars.xml to_html.xsl Xml/count_chars.xml
+ xsltproc --output ../lib/help_html/csp_2_gnuplot.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname csp_2_gnuplot.xml to_html.xsl Xml/csp_2_gnuplot.xml
+ xsltproc --output ../lib/help_html/del_list.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname del_list.xml to_html.xsl Xml/del_list.xml
+ xsltproc --output ../lib/help_html/di_clusters.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname di_clusters.xml to_html.xsl Xml/di_clusters.xml
+ xsltproc --output ../lib/help_html/dist.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname dist.xml to_html.xsl Xml/dist.xml
+ xsltproc --output ../lib/help_html/dssp_ift.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname dssp_ift.xml to_html.xsl Xml/dssp_ift.xml
+ xsltproc --output ../lib/help_html/e4.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname e4.xml to_html.xsl Xml/e4.xml
+ xsltproc --output ../lib/help_html/e4_block.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname e4_block.xml to_html.xsl Xml/e4_block.xml
+ xsltproc --output ../lib/help_html/e4_consensus.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname e4_consensus.xml to_html.xsl Xml/e4_consensus.xml
+ xsltproc --output ../lib/help_html/e4_modsai.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname e4_modsai.xml to_html.xsl Xml/e4_modsai.xml
+ xsltproc --output ../lib/help_html/e4_options.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname e4_options.xml to_html.xsl Xml/e4_options.xml
+ xsltproc --output ../lib/help_html/e4_replace.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname e4_replace.xml to_html.xsl Xml/e4_replace.xml
+ xsltproc --output ../lib/help_html/e4_search.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname e4_search.xml to_html.xsl Xml/e4_search.xml
+ xsltproc --output ../lib/help_html/ebi_ift.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname ebi_ift.xml to_html.xsl Xml/ebi_ift.xml
+ xsltproc --output ../lib/help_html/ecoliref.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname ecoliref.xml to_html.xsl Xml/ecoliref.xml
+ xsltproc --output ../lib/help_html/ed4_nds.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname ed4_nds.xml to_html.xsl Xml/ed4_nds.xml
+ xsltproc --output ../lib/help_html/exec_bug.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname exec_bug.xml to_html.xsl Xml/exec_bug.xml
+ xsltproc --output ../lib/help_html/export_format.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname export_format.xml to_html.xsl Xml/export_format.xml
+ xsltproc --output ../lib/help_html/extended.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname extended.xml to_html.xsl Xml/extended.xml
+ xsltproc --output ../lib/help_html/faligner.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname faligner.xml to_html.xsl Xml/faligner.xml
+ xsltproc --output ../lib/help_html/fasta_ift.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname fasta_ift.xml to_html.xsl Xml/fasta_ift.xml
+ xsltproc --output ../lib/help_html/gde_flat_ift.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gde_flat_ift.xml to_html.xsl Xml/gde_flat_ift.xml
+ xsltproc --output ../lib/help_html/gde_menus.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gde_menus.xml to_html.xsl Xml/gde_menus.xml
+ xsltproc --output ../lib/help_html/gen_create.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gen_create.xml to_html.xsl Xml/gen_create.xml
+ xsltproc --output ../lib/help_html/gene_extract.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_extract.xml to_html.xsl Xml/gene_extract.xml
+ xsltproc --output ../lib/help_html/gene_hide.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_hide.xml to_html.xsl Xml/gene_hide.xml
+ xsltproc --output ../lib/help_html/gene_info.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_info.xml to_html.xsl Xml/gene_info.xml
+ xsltproc --output ../lib/help_html/gene_map.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_map.xml to_html.xsl Xml/gene_map.xml
+ xsltproc --output ../lib/help_html/gene_mark.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_mark.xml to_html.xsl Xml/gene_mark.xml
+ xsltproc --output ../lib/help_html/gene_mode.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_mode.xml to_html.xsl Xml/gene_mode.xml
+ xsltproc --output ../lib/help_html/gene_options.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_options.xml to_html.xsl Xml/gene_options.xml
+ xsltproc --output ../lib/help_html/gene_search.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_search.xml to_html.xsl Xml/gene_search.xml
+ xsltproc --output ../lib/help_html/gene_species.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_species.xml to_html.xsl Xml/gene_species.xml
+ xsltproc --output ../lib/help_html/gene_species_field_transfer.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_species_field_transfer.xml to_html.xsl Xml/gene_species_field_transfer.xml
+ xsltproc --output ../lib/help_html/gene_species_mark.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname gene_species_mark.xml to_html.xsl Xml/gene_species_mark.xml
+ xsltproc --output ../lib/help_html/genes.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname genes.xml to_html.xsl Xml/genes.xml
+ xsltproc --output ../lib/help_html/glossary.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname glossary.xml to_html.xsl Xml/glossary.xml
+ xsltproc --output ../lib/help_html/helix.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname helix.xml to_html.xsl Xml/helix.xml
+ xsltproc --output ../lib/help_html/helixsym.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname helixsym.xml to_html.xsl Xml/helixsym.xml
+ xsltproc --output ../lib/help_html/help.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname help.xml to_html.xsl Xml/help.xml
+ xsltproc --output ../lib/help_html/importift.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname importift.xml to_html.xsl Xml/importift.xml
+ xsltproc --output ../lib/help_html/input_mask.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname input_mask.xml to_html.xsl Xml/input_mask.xml
+ xsltproc --output ../lib/help_html/input_mask_format.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname input_mask_format.xml to_html.xsl Xml/input_mask_format.xml
+ xsltproc --output ../lib/help_html/input_mask_new.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname input_mask_new.xml to_html.xsl Xml/input_mask_new.xml
+ xsltproc --output ../lib/help_html/insdel.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname insdel.xml to_html.xsl Xml/insdel.xml
+ xsltproc --output ../lib/help_html/insdel_sai.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname insdel_sai.xml to_html.xsl Xml/insdel_sai.xml
+ xsltproc --output ../lib/help_html/islandhopping.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname islandhopping.xml to_html.xsl Xml/islandhopping.xml
+ xsltproc --output ../lib/help_html/iupac-codes.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname iupac-codes.xml to_html.xsl Xml/iupac-codes.xml
+ xsltproc --output ../lib/help_html/macro.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname macro.xml to_html.xsl Xml/macro.xml
+ xsltproc --output ../lib/help_html/man_arb_edit4.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname man_arb_edit4.xml to_html.xsl Xml/man_arb_edit4.xml
+ xsltproc --output ../lib/help_html/manual.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname manual.xml to_html.xsl Xml/manual.xml
+ xsltproc --output ../lib/help_html/mark.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mark.xml to_html.xsl Xml/mark.xml
+ xsltproc --output ../lib/help_html/mark_duplicates.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mark_duplicates.xml to_html.xsl Xml/mark_duplicates.xml
+ xsltproc --output ../lib/help_html/mark_genes.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mark_genes.xml to_html.xsl Xml/mark_genes.xml
+ xsltproc --output ../lib/help_html/mark_list.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mark_list.xml to_html.xsl Xml/mark_list.xml
+ xsltproc --output ../lib/help_html/markbyref.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname markbyref.xml to_html.xsl Xml/markbyref.xml
+ xsltproc --output ../lib/help_html/markcolor.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname markcolor.xml to_html.xsl Xml/markcolor.xml
+ xsltproc --output ../lib/help_html/matrix_settings.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname matrix_settings.xml to_html.xsl Xml/matrix_settings.xml
+ xsltproc --output ../lib/help_html/max_freq.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname max_freq.xml to_html.xsl Xml/max_freq.xml
+ xsltproc --output ../lib/help_html/merge_species.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname merge_species.xml to_html.xsl Xml/merge_species.xml
+ xsltproc --output ../lib/help_html/mg_alignment.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mg_alignment.xml to_html.xsl Xml/mg_alignment.xml
+ xsltproc --output ../lib/help_html/mg_configs.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mg_configs.xml to_html.xsl Xml/mg_configs.xml
+ xsltproc --output ../lib/help_html/mg_extendeds.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mg_extendeds.xml to_html.xsl Xml/mg_extendeds.xml
+ xsltproc --output ../lib/help_html/mg_names.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mg_names.xml to_html.xsl Xml/mg_names.xml
+ xsltproc --output ../lib/help_html/mg_preserve.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mg_preserve.xml to_html.xsl Xml/mg_preserve.xml
+ xsltproc --output ../lib/help_html/mg_spec_sel_field.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mg_spec_sel_field.xml to_html.xsl Xml/mg_spec_sel_field.xml
+ xsltproc --output ../lib/help_html/mg_species.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mg_species.xml to_html.xsl Xml/mg_species.xml
+ xsltproc --output ../lib/help_html/mg_trees.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mg_trees.xml to_html.xsl Xml/mg_trees.xml
+ xsltproc --output ../lib/help_html/missbase.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname missbase.xml to_html.xsl Xml/missbase.xml
+ xsltproc --output ../lib/help_html/mod_field_list.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mod_field_list.xml to_html.xsl Xml/mod_field_list.xml
+ xsltproc --output ../lib/help_html/mode.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode.xml to_html.xsl Xml/mode.xml
+ xsltproc --output ../lib/help_html/mode_group.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_group.xml to_html.xsl Xml/mode_group.xml
+ xsltproc --output ../lib/help_html/mode_info.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_info.xml to_html.xsl Xml/mode_info.xml
+ xsltproc --output ../lib/help_html/mode_kernlin.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_kernlin.xml to_html.xsl Xml/mode_kernlin.xml
+ xsltproc --output ../lib/help_html/mode_length.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_length.xml to_html.xsl Xml/mode_length.xml
+ xsltproc --output ../lib/help_html/mode_lzoom.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_lzoom.xml to_html.xsl Xml/mode_lzoom.xml
+ xsltproc --output ../lib/help_html/mode_mark.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_mark.xml to_html.xsl Xml/mode_mark.xml
+ xsltproc --output ../lib/help_html/mode_move.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_move.xml to_html.xsl Xml/mode_move.xml
+ xsltproc --output ../lib/help_html/mode_nni.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_nni.xml to_html.xsl Xml/mode_nni.xml
+ xsltproc --output ../lib/help_html/mode_optimize.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_optimize.xml to_html.xsl Xml/mode_optimize.xml
+ xsltproc --output ../lib/help_html/mode_pzoom.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_pzoom.xml to_html.xsl Xml/mode_pzoom.xml
+ xsltproc --output ../lib/help_html/mode_rotate.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_rotate.xml to_html.xsl Xml/mode_rotate.xml
+ xsltproc --output ../lib/help_html/mode_select.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_select.xml to_html.xsl Xml/mode_select.xml
+ xsltproc --output ../lib/help_html/mode_setroot.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_setroot.xml to_html.xsl Xml/mode_setroot.xml
+ xsltproc --output ../lib/help_html/mode_spread.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_spread.xml to_html.xsl Xml/mode_spread.xml
+ xsltproc --output ../lib/help_html/mode_swap.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_swap.xml to_html.xsl Xml/mode_swap.xml
+ xsltproc --output ../lib/help_html/mode_width.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_width.xml to_html.xsl Xml/mode_width.xml
+ xsltproc --output ../lib/help_html/mode_www.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mode_www.xml to_html.xsl Xml/mode_www.xml
+ xsltproc --output ../lib/help_html/mp_params.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname mp_params.xml to_html.xsl Xml/mp_params.xml
+ xsltproc --output ../lib/help_html/multifurcate.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname multifurcate.xml to_html.xsl Xml/multifurcate.xml
+ xsltproc --output ../lib/help_html/multiprobe.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname multiprobe.xml to_html.xsl Xml/multiprobe.xml
+ xsltproc --output ../lib/help_html/multiproberesults.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname multiproberesults.xml to_html.xsl Xml/multiproberesults.xml
+ xsltproc --output ../lib/help_html/namesadmin.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname namesadmin.xml to_html.xsl Xml/namesadmin.xml
+ xsltproc --output ../lib/help_html/ne_align_seq.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname ne_align_seq.xml to_html.xsl Xml/ne_align_seq.xml
+ xsltproc --output ../lib/help_html/nekey_map.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname nekey_map.xml to_html.xsl Xml/nekey_map.xml
+ xsltproc --output ../lib/help_html/newwindow.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname newwindow.xml to_html.xsl Xml/newwindow.xml
+ xsltproc --output ../lib/help_html/next_neighbours.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname next_neighbours.xml to_html.xsl Xml/next_neighbours.xml
+ xsltproc --output ../lib/help_html/next_neighbours_common.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname next_neighbours_common.xml to_html.xsl Xml/next_neighbours_common.xml
+ xsltproc --output ../lib/help_html/next_neighbours_listed.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname next_neighbours_listed.xml to_html.xsl Xml/next_neighbours_listed.xml
+ xsltproc --output ../lib/help_html/no_tree.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname no_tree.xml to_html.xsl Xml/no_tree.xml
+ xsltproc --output ../lib/help_html/nt_align_select.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname nt_align_select.xml to_html.xsl Xml/nt_align_select.xml
+ xsltproc --output ../lib/help_html/nt_keys.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname nt_keys.xml to_html.xsl Xml/nt_keys.xml
+ xsltproc --output ../lib/help_html/nt_props_data.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname nt_props_data.xml to_html.xsl Xml/nt_props_data.xml
+ xsltproc --output ../lib/help_html/nt_tree_select.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname nt_tree_select.xml to_html.xsl Xml/nt_tree_select.xml
+ xsltproc --output ../lib/help_html/nt_tree_settings.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname nt_tree_settings.xml to_html.xsl Xml/nt_tree_settings.xml
+ xsltproc --output ../lib/help_html/optimize.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname optimize.xml to_html.xsl Xml/optimize.xml
+ xsltproc --output ../lib/help_html/organism_mark.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname organism_mark.xml to_html.xsl Xml/organism_mark.xml
+ xsltproc --output ../lib/help_html/organisms.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname organisms.xml to_html.xsl Xml/organisms.xml
+ xsltproc --output ../lib/help_html/pa_add.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pa_add.xml to_html.xsl Xml/pa_add.xml
+ xsltproc --output ../lib/help_html/pa_add_sel.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pa_add_sel.xml to_html.xsl Xml/pa_add_sel.xml
+ xsltproc --output ../lib/help_html/pa_bootstrap.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pa_bootstrap.xml to_html.xsl Xml/pa_bootstrap.xml
+ xsltproc --output ../lib/help_html/pa_branchlengths.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pa_branchlengths.xml to_html.xsl Xml/pa_branchlengths.xml
+ xsltproc --output ../lib/help_html/pa_optimizer.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pa_optimizer.xml to_html.xsl Xml/pa_optimizer.xml
+ xsltproc --output ../lib/help_html/pa_partial.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pa_partial.xml to_html.xsl Xml/pa_partial.xml
+ xsltproc --output ../lib/help_html/pa_quick.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pa_quick.xml to_html.xsl Xml/pa_quick.xml
+ xsltproc --output ../lib/help_html/pa_quick_sel.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pa_quick_sel.xml to_html.xsl Xml/pa_quick_sel.xml
+ xsltproc --output ../lib/help_html/pars.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pars.xml to_html.xsl Xml/pars.xml
+ xsltproc --output ../lib/help_html/partial_sequences.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname partial_sequences.xml to_html.xsl Xml/partial_sequences.xml
+ xsltproc --output ../lib/help_html/pd_spec_param.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pd_spec_param.xml to_html.xsl Xml/pd_spec_param.xml
+ xsltproc --output ../lib/help_html/pfold.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pfold.xml to_html.xsl Xml/pfold.xml
+ xsltproc --output ../lib/help_html/pfold_props.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pfold_props.xml to_html.xsl Xml/pfold_props.xml
+ xsltproc --output ../lib/help_html/pfold_sai.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pfold_sai.xml to_html.xsl Xml/pfold_sai.xml
+ xsltproc --output ../lib/help_html/ph_export_markerline.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname ph_export_markerline.xml to_html.xsl Xml/ph_export_markerline.xml
+ xsltproc --output ../lib/help_html/phyl.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname phyl.xml to_html.xsl Xml/phyl.xml
+ xsltproc --output ../lib/help_html/phylo.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname phylo.xml to_html.xsl Xml/phylo.xml
+ xsltproc --output ../lib/help_html/pm_spec_param.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pm_spec_param.xml to_html.xsl Xml/pm_spec_param.xml
+ xsltproc --output ../lib/help_html/pos_var_pars.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pos_var_pars.xml to_html.xsl Xml/pos_var_pars.xml
+ xsltproc --output ../lib/help_html/primer.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname primer.xml to_html.xsl Xml/primer.xml
+ xsltproc --output ../lib/help_html/primer_new.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname primer_new.xml to_html.xsl Xml/primer_new.xml
+ xsltproc --output ../lib/help_html/primer_parameters.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname primer_parameters.xml to_html.xsl Xml/primer_parameters.xml
+ xsltproc --output ../lib/help_html/probe_param.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname probe_param.xml to_html.xsl Xml/probe_param.xml
+ xsltproc --output ../lib/help_html/probeadmin.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname probeadmin.xml to_html.xsl Xml/probeadmin.xml
+ xsltproc --output ../lib/help_html/probedesign.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname probedesign.xml to_html.xsl Xml/probedesign.xml
+ xsltproc --output ../lib/help_html/probedesignresult.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname probedesignresult.xml to_html.xsl Xml/probedesignresult.xml
+ xsltproc --output ../lib/help_html/probematch.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname probematch.xml to_html.xsl Xml/probematch.xml
+ xsltproc --output ../lib/help_html/props_frame.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname props_frame.xml to_html.xsl Xml/props_frame.xml
+ xsltproc --output ../lib/help_html/props_nds.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname props_nds.xml to_html.xsl Xml/props_nds.xml
+ xsltproc --output ../lib/help_html/props_www.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname props_www.xml to_html.xsl Xml/props_www.xml
+ xsltproc --output ../lib/help_html/proteinViewer.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname proteinViewer.xml to_html.xsl Xml/proteinViewer.xml
+ xsltproc --output ../lib/help_html/pt_server.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname pt_server.xml to_html.xsl Xml/pt_server.xml
+ xsltproc --output ../lib/help_html/quit.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname quit.xml to_html.xsl Xml/quit.xml
+ xsltproc --output ../lib/help_html/rdp_ift.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname rdp_ift.xml to_html.xsl Xml/rdp_ift.xml
+ xsltproc --output ../lib/help_html/realign_dna.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname realign_dna.xml to_html.xsl Xml/realign_dna.xml
+ xsltproc --output ../lib/help_html/reg.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname reg.xml to_html.xsl Xml/reg.xml
+ xsltproc --output ../lib/help_html/rename.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname rename.xml to_html.xsl Xml/rename.xml
+ xsltproc --output ../lib/help_html/resortbyother.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname resortbyother.xml to_html.xsl Xml/resortbyother.xml
+ xsltproc --output ../lib/help_html/resorttree.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname resorttree.xml to_html.xsl Xml/resorttree.xml
+ xsltproc --output ../lib/help_html/rna3d_dispBases.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname rna3d_dispBases.xml to_html.xsl Xml/rna3d_dispBases.xml
+ xsltproc --output ../lib/help_html/rna3d_dispHelices.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname rna3d_dispHelices.xml to_html.xsl Xml/rna3d_dispHelices.xml
+ xsltproc --output ../lib/help_html/rna3d_dispMolecule.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname rna3d_dispMolecule.xml to_html.xsl Xml/rna3d_dispMolecule.xml
+ xsltproc --output ../lib/help_html/rna3d_general.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname rna3d_general.xml to_html.xsl Xml/rna3d_general.xml
+ xsltproc --output ../lib/help_html/rna3d_mapSeqData.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname rna3d_mapSeqData.xml to_html.xsl Xml/rna3d_mapSeqData.xml
+ xsltproc --output ../lib/help_html/rst_log_zoom.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname rst_log_zoom.xml to_html.xsl Xml/rst_log_zoom.xml
+ xsltproc --output ../lib/help_html/rst_phys_zoom.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname rst_phys_zoom.xml to_html.xsl Xml/rst_phys_zoom.xml
+ xsltproc --output ../lib/help_html/saiProbeHelp.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname saiProbeHelp.xml to_html.xsl Xml/saiProbeHelp.xml
+ xsltproc --output ../lib/help_html/save.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname save.xml to_html.xsl Xml/save.xml
+ xsltproc --output ../lib/help_html/save_matrix.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname save_matrix.xml to_html.xsl Xml/save_matrix.xml
+ xsltproc --output ../lib/help_html/saveas.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname saveas.xml to_html.xsl Xml/saveas.xml
+ xsltproc --output ../lib/help_html/savedef.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname savedef.xml to_html.xsl Xml/savedef.xml
+ xsltproc --output ../lib/help_html/scandb.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname scandb.xml to_html.xsl Xml/scandb.xml
+ xsltproc --output ../lib/help_html/search_duplicates.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname search_duplicates.xml to_html.xsl Xml/search_duplicates.xml
+ xsltproc --output ../lib/help_html/search_equal_fields.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname search_equal_fields.xml to_html.xsl Xml/search_equal_fields.xml
+ xsltproc --output ../lib/help_html/searching.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname searching.xml to_html.xsl Xml/searching.xml
+ xsltproc --output ../lib/help_html/sec_display.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sec_display.xml to_html.xsl Xml/sec_display.xml
+ xsltproc --output ../lib/help_html/sec_keys.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sec_keys.xml to_html.xsl Xml/sec_keys.xml
+ xsltproc --output ../lib/help_html/sec_main.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sec_main.xml to_html.xsl Xml/sec_main.xml
+ xsltproc --output ../lib/help_html/sec_mode.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sec_mode.xml to_html.xsl Xml/sec_mode.xml
+ xsltproc --output ../lib/help_html/sec_props.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sec_props.xml to_html.xsl Xml/sec_props.xml
+ xsltproc --output ../lib/help_html/secedit_imexport.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname secedit_imexport.xml to_html.xsl Xml/secedit_imexport.xml
+ xsltproc --output ../lib/help_html/security.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname security.xml to_html.xsl Xml/security.xml
+ xsltproc --output ../lib/help_html/sel_box.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sel_box.xml to_html.xsl Xml/sel_box.xml
+ xsltproc --output ../lib/help_html/sel_fil.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sel_fil.xml to_html.xsl Xml/sel_fil.xml
+ xsltproc --output ../lib/help_html/sel_spec.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sel_spec.xml to_html.xsl Xml/sel_spec.xml
+ xsltproc --output ../lib/help_html/selected.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname selected.xml to_html.xsl Xml/selected.xml
+ xsltproc --output ../lib/help_html/selected_gene.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname selected_gene.xml to_html.xsl Xml/selected_gene.xml
+ xsltproc --output ../lib/help_html/seq_quality.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname seq_quality.xml to_html.xsl Xml/seq_quality.xml
+ xsltproc --output ../lib/help_html/sequence_colors.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sequence_colors.xml to_html.xsl Xml/sequence_colors.xml
+ xsltproc --output ../lib/help_html/set_color_of_listed.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname set_color_of_listed.xml to_html.xsl Xml/set_color_of_listed.xml
+ xsltproc --output ../lib/help_html/set_protection.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname set_protection.xml to_html.xsl Xml/set_protection.xml
+ xsltproc --output ../lib/help_html/sina_main.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sina_main.xml to_html.xsl Xml/sina_main.xml
+ xsltproc --output ../lib/help_html/sp_count_mrk.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sp_count_mrk.xml to_html.xsl Xml/sp_count_mrk.xml
+ xsltproc --output ../lib/help_html/sp_del_mrkd.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sp_del_mrkd.xml to_html.xsl Xml/sp_del_mrkd.xml
+ xsltproc --output ../lib/help_html/sp_info.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sp_info.xml to_html.xsl Xml/sp_info.xml
+ xsltproc --output ../lib/help_html/sp_info_locked.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sp_info_locked.xml to_html.xsl Xml/sp_info_locked.xml
+ xsltproc --output ../lib/help_html/sp_mark.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sp_mark.xml to_html.xsl Xml/sp_mark.xml
+ xsltproc --output ../lib/help_html/sp_rename.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sp_rename.xml to_html.xsl Xml/sp_rename.xml
+ xsltproc --output ../lib/help_html/sp_sort_fld.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sp_sort_fld.xml to_html.xsl Xml/sp_sort_fld.xml
+ xsltproc --output ../lib/help_html/sp_search.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sp_search.xml to_html.xsl Xml/sp_search.xml
+ xsltproc --output ../lib/help_html/sp_sort_phyl.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sp_sort_phyl.xml to_html.xsl Xml/sp_sort_phyl.xml
+ xsltproc --output ../lib/help_html/sp_sp_2_ext.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname sp_sp_2_ext.xml to_html.xsl Xml/sp_sp_2_ext.xml
+ xsltproc --output ../lib/help_html/spa_create.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname spa_create.xml to_html.xsl Xml/spa_create.xml
+ xsltproc --output ../lib/help_html/spa_copy.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname spa_copy.xml to_html.xsl Xml/spa_copy.xml
+ xsltproc --output ../lib/help_html/spa_rename.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname spa_rename.xml to_html.xsl Xml/spa_rename.xml
+ xsltproc --output ../lib/help_html/spa_delete.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname spa_delete.xml to_html.xsl Xml/spa_delete.xml
+ xsltproc --output ../lib/help_html/spaf_convert.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname spaf_convert.xml to_html.xsl Xml/spaf_convert.xml
+ xsltproc --output ../lib/help_html/spaf_create.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname spaf_create.xml to_html.xsl Xml/spaf_create.xml
+ xsltproc --output ../lib/help_html/spaf_delete.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname spaf_delete.xml to_html.xsl Xml/spaf_delete.xml
+ xsltproc --output ../lib/help_html/spaf_reorder.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname spaf_reorder.xml to_html.xsl Xml/spaf_reorder.xml
+ xsltproc --output ../lib/help_html/species.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname species.xml to_html.xsl Xml/species.xml
+ xsltproc --output ../lib/help_html/species_join.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname species_join.xml to_html.xsl Xml/species_join.xml
+ xsltproc --output ../lib/help_html/srt.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname srt.xml to_html.xsl Xml/srt.xml
+ xsltproc --output ../lib/help_html/st_ml.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname st_ml.xml to_html.xsl Xml/st_ml.xml
+ xsltproc --output ../lib/help_html/submission.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname submission.xml to_html.xsl Xml/submission.xml
+ xsltproc --output ../lib/help_html/tags.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tags.xml to_html.xsl Xml/tags.xml
+ xsltproc --output ../lib/help_html/tbl_boot2len.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tbl_boot2len.xml to_html.xsl Xml/tbl_boot2len.xml
+ xsltproc --output ../lib/help_html/tbl_justify.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tbl_justify.xml to_html.xsl Xml/tbl_justify.xml
+ xsltproc --output ../lib/help_html/tbl_reset.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tbl_reset.xml to_html.xsl Xml/tbl_reset.xml
+ xsltproc --output ../lib/help_html/tbl_scale.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tbl_scale.xml to_html.xsl Xml/tbl_scale.xml
+ xsltproc --output ../lib/help_html/tgroupall.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tgroupall.xml to_html.xsl Xml/tgroupall.xml
+ xsltproc --output ../lib/help_html/tgroupcolor.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tgroupcolor.xml to_html.xsl Xml/tgroupcolor.xml
+ xsltproc --output ../lib/help_html/tgroupnmrkd.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tgroupnmrkd.xml to_html.xsl Xml/tgroupnmrkd.xml
+ xsltproc --output ../lib/help_html/tkeep_mrkd.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tkeep_mrkd.xml to_html.xsl Xml/tkeep_mrkd.xml
+ xsltproc --output ../lib/help_html/toggle_secinfo.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname toggle_secinfo.xml to_html.xsl Xml/toggle_secinfo.xml
+ xsltproc --output ../lib/help_html/tr_export.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tr_export.xml to_html.xsl Xml/tr_export.xml
+ xsltproc --output ../lib/help_html/tr_import.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tr_import.xml to_html.xsl Xml/tr_import.xml
+ xsltproc --output ../lib/help_html/tr_jump.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tr_jump.xml to_html.xsl Xml/tr_jump.xml
+ xsltproc --output ../lib/help_html/tr_type_irs.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tr_type_irs.xml to_html.xsl Xml/tr_type_irs.xml
+ xsltproc --output ../lib/help_html/tr_type_list.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tr_type_list.xml to_html.xsl Xml/tr_type_list.xml
+ xsltproc --output ../lib/help_html/tr_type_nds.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tr_type_nds.xml to_html.xsl Xml/tr_type_nds.xml
+ xsltproc --output ../lib/help_html/track_ali_changes.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname track_ali_changes.xml to_html.xsl Xml/track_ali_changes.xml
+ xsltproc --output ../lib/help_html/tr_type_radial.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tr_type_radial.xml to_html.xsl Xml/tr_type_radial.xml
+ xsltproc --output ../lib/help_html/trans_anal.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname trans_anal.xml to_html.xsl Xml/trans_anal.xml
+ xsltproc --output ../lib/help_html/translate_dna_2_pro.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname translate_dna_2_pro.xml to_html.xsl Xml/translate_dna_2_pro.xml
+ xsltproc --output ../lib/help_html/tree2file.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tree2file.xml to_html.xsl Xml/tree2file.xml
+ xsltproc --output ../lib/help_html/tree2prt.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tree2prt.xml to_html.xsl Xml/tree2prt.xml
+ xsltproc --output ../lib/help_html/tree_cmp.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tree_cmp.xml to_html.xsl Xml/tree_cmp.xml
+ xsltproc --output ../lib/help_html/tree_diff.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tree_diff.xml to_html.xsl Xml/tree_diff.xml
+ xsltproc --output ../lib/help_html/treeadm.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname treeadm.xml to_html.xsl Xml/treeadm.xml
+ xsltproc --output ../lib/help_html/trees.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname trees.xml to_html.xsl Xml/trees.xml
+ xsltproc --output ../lib/help_html/trm_boot.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname trm_boot.xml to_html.xsl Xml/trm_boot.xml
+ xsltproc --output ../lib/help_html/trm_del.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname trm_del.xml to_html.xsl Xml/trm_del.xml
+ xsltproc --output ../lib/help_html/tungroupall.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname tungroupall.xml to_html.xsl Xml/tungroupall.xml
+ xsltproc --output ../lib/help_html/trm_mrkd.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname trm_mrkd.xml to_html.xsl Xml/trm_mrkd.xml
+ xsltproc --output ../lib/help_html/undo.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname undo.xml to_html.xsl Xml/undo.xml
+ xsltproc --output ../lib/help_html/unittest.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname unittest.xml to_html.xsl Xml/unittest.xml
+ xsltproc --output ../lib/help_html/universal_ift.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname universal_ift.xml to_html.xsl Xml/universal_ift.xml
+ xsltproc --output ../lib/help_html/unmark_list.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname unmark_list.xml to_html.xsl Xml/unmark_list.xml
+ xsltproc --output ../lib/help_html/user_matrix.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname user_matrix.xml to_html.xsl Xml/user_matrix.xml
+ xsltproc --output ../lib/help_html/version.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname version.xml to_html.xsl Xml/version.xml
+ xsltproc --output ../lib/help_html/visualizeSAI.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname visualizeSAI.xml to_html.xsl Xml/visualizeSAI.xml
+ xsltproc --output ../lib/help_html/vn_delete.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname vn_delete.xml to_html.xsl Xml/vn_delete.xml
+ xsltproc --output ../lib/help_html/vn_import.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname vn_import.xml to_html.xsl Xml/vn_import.xml
+ xsltproc --output ../lib/help_html/vn_search.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname vn_search.xml to_html.xsl Xml/vn_search.xml
+ xsltproc --output ../lib/help_html/vn_suggest.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname vn_suggest.xml to_html.xsl Xml/vn_suggest.xml
+ xsltproc --output ../lib/help_html/write_field_list.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname write_field_list.xml to_html.xsl Xml/write_field_list.xml
cp -p Logo_25wht.gif ../lib/help_html/Logo_25wht.gif
+ xsltproc --output ../lib/help_html/prompt/format_alignments.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname prompt/format_alignments.xml to_html.xsl Xml/prompt/format_alignments.xml
+ xsltproc --output ../lib/help_html/help_index.html --nonet --nomkdir --stringparam xml_location Xml --stringparam myname help_index.xml to_html.xsl Xml/help_index.xml
make[6]: Leaving directory '/<<PKGBUILDDIR>>/HELP_SOURCE'
1.61user 0.72system 0:02.48elapsed 94%CPU (0avgtext+0avgdata 22620maxresident)k
0inputs+5840outputs (0major+294794minor)pagefaults 0swaps
make[5]: Leaving directory '/<<PKGBUILDDIR>>/HELP_SOURCE'
[46:25.572185301] ------------------------------------------------ Make HELP_SOURCE [done]
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: *** [Makefile:1968: arb] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:2303: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j2 "INSTALL=install --strip-program=true" all returned exit code 2
make[1]: *** [debian/rules:51: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:39: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

Hello,

I was able to reproduce the issue on a ppc64el machine using sbuild.
Below is the relevant error log:

make[4]: Leaving directory '/build/reproducible-path/arb-6.0.6'
make[3]: *** [Makefile:1968: arb] Error 2
make[3]: Leaving directory '/build/reproducible-path/arb-6.0.6'
make[2]: *** [Makefile:2303: all] Error 2
make[2]: Leaving directory '/build/reproducible-path/arb-6.0.6'
dh_auto_build: error: make -j16 "INSTALL=install --strip-program=true"
all returned exit code 2
make[1]: *** [debian/rules:51: override_dh_auto_build] Error 25
make[1]: Leaving directory '/build/reproducible-path/arb-6.0.6'
make: *** [debian/rules:39: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit
status 2


The build failed during the build stage inside the sbuild chroot for
ppc64el architecture.



+------------------------------------------------------------------------------+
| Summary                                      Mon, 22 Sep 2025 11:25:43
+0000 |
+------------------------------------------------------------------------------+

Build Architecture: ppc64el
Build Type: binary
Build-Space: 333292
Build-Time: 92
Distribution: forky-ppc64el-sbuild
Fail-Stage: build
Host Architecture: ppc64el
Install-Time: 54
Machine Architecture: ppc64el
Package: arb
Package-Time: 150
Source-Version: 6.0.6-8



I will investigate the issue further and get back to you.

Thanks,
Trupti

Hello,

The build fails with GCC 14+ because some functions in CAP2.c are
written in an old C style.
Earlier GCC versions allowed this, but new compilers treat them as
functions with no arguments.
So calls like my_calloc(1) or ckopen(file,mode) now give errors.
The code needs to be updated with proper function declarations.

I will work on preparing a patch to fix this.


Thanks,
Trupti

Hi,

Please find attached a patch (gcc15_fix_cap2.patch) which fixes the
CAP2.c build failures with GCC 15 on ppc64el. The issue was caused by
incorrect function prototypes in CAP2.c. This patch corrects the
function signatures and ensures consistent ANSI-style declarations.

Built and tested successfully on ppc64el with GCC 15.

Note: there are still other Altivec/Eigen-related errors in the code, so
the full build is still failing. Those need to be addressed in a
separate patch.

I would appreciate a review of this patch and any suggestions for
improvements.


Thanks,
Trupti

Hello,


Previously, arb(6.0.6-7) FTBFS on amd64 with GCC 14 due to implicit-int
and implicit-function-declaration errors.

This issue was fixed in bug #1078136 (
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1078136)
by adding the following to debian/rules:

export DEB_CFLAGS_MAINT_APPEND=\
   -Wno-error=implicit-int \
   -Wno-error=implicit-function-declaration


This change demotes those errors to warnings and allows the build to
succeed on amd64.

On ppc64el, however, GCC 14 enforces stricter prototype and pointer-type
checks, leading to additional errors such as “ too many arguments to
function 'ckopen'; expected 0, have 2”

I am currently testing by adding -Wno-error=incompatible-pointer-types
to see if it resolves the issue, and will try -std=gnu89 if required for
full compatibility until the source is updated.


Thanks,
Trupti

We believe that the bug you reported is fixed in the latest version of
arb, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1114476@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated arb package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Fri, 23 Oct 2026 11:56:22 +0200
Source: arb
Binary: arb arb-common arb-dbgsym arb-doc libarb libarb-dbgsym libarb-dev
Architecture: source all amd64
Version: 7.0+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 arb        - phylogenetic sequence analysis suite - main program
 arb-common - phylogenetic sequence analysis suite - common files
 arb-doc    - phylogenetic sequence analysis suite - documentation
 libarb     - phylogenetic sequence analysis suite - libraries
 libarb-dev - phylogenetic sequence analysis suite - development files
Closes: 1089541 1100471 1102185 1102816 1114476 1120614 1137377
Changes:
 arb (7.0+ds-1) unstable; urgency=medium
 .
   [ Charles Plessy ]
   * Add perl-xs-dev to Build-Depends. Closes: #1102816
   * Standards-Version: 4.7.4 (routine-update)
   * debhelper-compat 13 (routine-update)
   * Reflow Uploaders field (cme)
   * Remove Priority field (cme)
   * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
   * Reorder Files paragraphs in debian/copyright by directory depth.
   * Run debconf-updatepo after template changes.
 .
   [ Andreas Tille ]
   * New upstream version
     Closes: #1114476, #1089541
   * d/watch: version=5
   * Reformat the Last-Update date as ISO YYYY-MM-DD.
   * debputy lint --auto-fix (routine-update)
   * Adapt patches to the new upstream version:
     - Drop 10, 20, 30 and 40, which were applied upstream.
     - Refresh the remaining patches for the new source layout.
     - Add 120 to disable GCC 16 vectorization checks.
     - Add 130 to build bundled RAxML/SATIVA sources as C17.
     - Add 140 to strip the C standard from the 'nostd' compatibility build.
   * Add libboost-dev and libxerces-c-dev to Build-Depends.
   * d/rules: build C sources as C17 and use dh_missing for compat 14.
   * Build RNACMA against system libeigen3 instead of bundled Eigen
     Closes: #1120614
   * Remove code copy of eigen from upstream source
   * Remove unused lintian-overrides
   * Make sure all files are installed and drop list-missing
 .
   [ Camaleón ]
   * Update Spanish debconf translation
     Closes: #1100471
 .
   [ Carles Pina i Estany ]
   * Update/add debconf template translation [INTL:ca]
     Closes: #1102185
 .
   [ Remus-Gabriel Chelu ]
   * Romanian translation of arb debconf template
     Closes: #1137377
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