#1141283 iva: Autopkgtests fail: File "hiv_pcr_primers.fa" not found.

Package:
iva
Source:
iva
Description:
iterative virus sequence assembler
Submitter:
Andrey Rakhmatullin
Date:
2026-07-08 12:05:02 UTC
Severity:
normal
Tags:
#1141283#5
Date:
2026-07-02 17:01:26 UTC
From:
To:
The following command failed with exit code 1
/usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar
--pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out

The output was:

Error! File "hiv_pcr_primers.fa" not found. Cannot continue
Traceback (most recent call last):
  File "/usr/bin/iva", line 184, in <module>
    p1.start()
    ~~~~~~~~^^
  File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start
    self._popen = self._Popen(self)
                  ~~~~~~~~~~~^^^^^^
  File "/usr/lib/python3.14/multiprocessing/context.py", line 230, in _Popen
    return _default_context.get_context().Process._Popen(process_obj)
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
  File "/usr/lib/python3.14/multiprocessing/context.py", line 306, in _Popen
    return Popen(process_obj)
  File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in
__init__
    super().__init__(process_obj)
    ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
  File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in
__init__
    self._launch(process_obj)
    ~~~~~~~~~~~~^^^^^^^^^^^^^
  File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 51, in
_launch
    self.sentinel, w = forkserver.connect_to_new_process(self._fds)
                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
  File "/usr/lib/python3.14/multiprocessing/forkserver.py", line 106, in
connect_to_new_process
    connection.answer_challenge(
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~^
            wrapped_client, self._forkserver_authkey)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.14/multiprocessing/connection.py", line 995, in
answer_challenge
    message = connection.recv_bytes(256)         # reject large message
  File "/usr/lib/python3.14/multiprocessing/connection.py", line 226, in
recv_bytes
    buf = self._recv_bytes(maxlength)
  File "/usr/lib/python3.14/multiprocessing/connection.py", line 451, in
_recv_bytes
    buf = self._recv(4)
  File "/usr/lib/python3.14/multiprocessing/connection.py", line 416, in _recv
    chunk = read(handle, to_read)
ConnectionResetError: [Errno 104] Connection reset by peer

#1141283#10
Date:
2026-07-08 12:03:24 UTC
From:
To:
Hello,

Bug #1141283 in iva reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/iva/-/commit/14deaa90204151c2e5081da30b9a9b4b54966473

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1141283

#1141283#15
Date:
2026-07-08 12:03:24 UTC
From:
To:
Hello,

Bug #1141283 in iva reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/iva/-/commit/665462f0425d35958f2b762bb56d7ac8f34e51a0

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1141283