#1143178 mrbayes-mpi: Spawns instances of regular mb instead of running one parallel instance

Package:
mrbayes-mpi
Source:
mrbayes-mpi
Description:
Bayesian Inference of Phylogeny - mpi version
Submitter:
Stepan
Date:
2026-09-02 12:37:03 UTC
Severity:
normal
Tags:
#1143178#5
Date:
2026-07-31 11:55:55 UTC
From:
To:
Dear Maintainer,

Running mb-mpi spawn instances of MrBayes instead of running the version
with parallel support. Compiling the parallel version from git source
produces a working version (https://github.com/NBISweden/MrBayes,
./configure --with-mpi=yes), but compiling the source debian package
doesn't.

A smaller problem is that the package is undocumented. The official
instructions say that the parallel version should be run with `mpirun`:
`mpirun -np 4 mb file.nex`. The debian package ships `mb-mpi` executable,
which is a bash wrapper that does that with environmental variable
MPI_OPTIONS passed to mpirun as options. But to figure it out, a user
needs to read the script.

#1143178#8
Date:
2026-09-01 16:21:12 UTC
From:
To:
Hello,

Bug #1143178 in mrbayes reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/mrbayes/-/commit/6aaf432e471af185d8838fc7ac398fa8bdacd8c9

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1143178

#1143178#15
Date:
2026-09-02 12:35:19 UTC
From:
To:
We believe that the bug you reported is fixed in the latest version of
mrbayes, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1143178@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated mrbayes package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Tue, 01 Sep 2026 18:03:08 +0200
Source: mrbayes
Binary: mrbayes mrbayes-dbgsym mrbayes-doc mrbayes-mpi mrbayes-mpi-dbgsym
Architecture: source amd64 all
Version: 3.2.7a-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 mrbayes    - Bayesian Inference of Phylogeny
 mrbayes-doc - Bayesian Inference of Phylogeny - manual
 mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version
Closes: 1143178
Changes:
 mrbayes (3.2.7a-8) unstable; urgency=medium
 .
   * Replace pkg-config with pkgconf in Build-Depends
   * d/watch: version=5
   * Controlling build with MPI changed from --enable-mpi to --with-mpi
     Closes: #1143178
   * Reformat the Last-Update date as ISO YYYY-MM-DD.
   * Remove redundant Priority: optional from source stanza.
   * Replace FSF postal address with a reference to
https://www.gnu.org/licenses/.
   * Update standards version to 4.7.4, no changes needed.
   * cme fix dpkg-control
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