Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202608/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:pytorch-geometric, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module
I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric
* Building wheel...
Successfully built torch_geometric-2.8.0-py3-none-any.whl
[... snipped ...]
self._context.run(self.run)
~~~~~~~~~~~~~~~~~^^^^^^^^^^
File "/usr/lib/python3.14/threading.py", line 1024, in run
self._target(*self._args, **self._kwargs)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.14/multiprocessing/queues.py", line 289, in _feed
queue_sem.release()
~~~~~~~~~~~~~~~~~^^
ValueError: semaphore or lock released too many times
Enable tracemalloc to get traceback where the object was allocated.
See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info.
warnings.warn(pytest.PytestUnhandledThreadExceptionWarning(msg))
test/nn/aggr/test_multi.py: 10 warnings
test/nn/dense/test_linear.py: 1 warning
test/nn/test_sequential.py: 1 warning
/usr/lib/python3.14/ast.py:506: UserWarning: The TorchScript type system doesn't support instance-level annotations on empty non-base types in `__init__`. Instead, either 1) use a type annotation in the class body, or 2) wrap the type in `torch.jit.Attribute`.
return visitor(node)
test/nn/dense/test_linear.py::test_hetero_linear_amp[None-cpu]
test/nn/dense/test_linear.py::test_hetero_linear_amp[True-cpu]
test/nn/dense/test_linear.py::test_hetero_linear_amp[False-cpu]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/nn/dense/test_linear.py:173: UserWarning: CUDA is not available or torch_xla is imported. Disabling autocast.
with torch.amp.autocast('cuda'):
test/profile/test_profiler.py::test_profiler[cpu]
/usr/lib/python3/dist-packages/torch/profiler/profiler.py:272: UserWarning: Warning: Profiler clears events at the end of each cycle.Only events from the current cycle will be reported.To keep events across cycles, set acc_events=True.
_warn_once(
test/test_edge_index.py::test_data_loader[True-2-int64]
test/test_edge_index.py::test_data_loader[True-2-int32]
test/test_hash_tensor.py::test_data_loader[True-2]
test/test_index.py::test_data_loader[True-2-int64]
test/test_index.py::test_data_loader[True-2-int32]
/usr/lib/python3/dist-packages/torch/utils/data/dataloader.py:1095: UserWarning: 'pin_memory' argument is set as true but no accelerator is found, then device pinned memory won't be used.
super().__init__(loader)
test/test_onnx.py::test_safe_onnx_export_with_skip_on_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround...
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_safe_onnx_export_with_skip_on_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=17
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_safe_onnx_export_with_skip_on_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=16
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_safe_onnx_export_with_skip_on_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=15
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_safe_onnx_export_with_skip_on_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=14
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_safe_onnx_export_with_skip_on_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=13
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_safe_onnx_export_with_skip_on_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=11
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_safe_onnx_export_with_skip_on_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with legacy settings (dynamo=False, opset_version=11)
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_safe_onnx_export_with_skip_on_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with minimal settings as last resort
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_safe_onnx_export_with_skip_on_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: ONNX export skipped due to known upstream issue (onnx_ir.serde.SerdeError). This is caused by a bug in the onnx_ir package where boolean allowzero attributes cannot be serialized. All workarounds failed. Consider updating packages: pip install --upgrade onnx onnxscript onnx_ir
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_serde_error_patterns
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround...
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_serde_error_patterns
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=17
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_serde_error_patterns
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=16
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_serde_error_patterns
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=15
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_serde_error_patterns
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=14
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_serde_error_patterns
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=13
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_serde_error_patterns
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=11
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_serde_error_patterns
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with legacy settings (dynamo=False, opset_version=11)
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_serde_error_patterns
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with minimal settings as last resort
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_serde_error_patterns
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: ONNX export skipped due to known upstream issue (onnx_ir.serde.SerdeError). This is caused by a bug in the onnx_ir package where boolean allowzero attributes cannot be serialized. All workarounds failed. Consider updating packages: pip install --upgrade onnx onnxscript onnx_ir
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_dynamo_fallback
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:219: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround...
result = safe_onnx_export(model, (x, ), f.name, dynamo=True)
test/test_onnx.py::test_dynamo_fallback
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:219: UserWarning: Retrying ONNX export with dynamo=False as workaround
result = safe_onnx_export(model, (x, ), f.name, dynamo=True)
test/test_onnx.py::test_opset_fallback
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:254: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround...
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_opset_fallback
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:254: UserWarning: Retrying ONNX export with opset_version=17
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround...
safe_onnx_export(model, (x, ), f.name, skip_on_error=False)
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=17
safe_onnx_export(model, (x, ), f.name, skip_on_error=False)
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=16
safe_onnx_export(model, (x, ), f.name, skip_on_error=False)
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=15
safe_onnx_export(model, (x, ), f.name, skip_on_error=False)
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=14
safe_onnx_export(model, (x, ), f.name, skip_on_error=False)
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=13
safe_onnx_export(model, (x, ), f.name, skip_on_error=False)
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=11
safe_onnx_export(model, (x, ), f.name, skip_on_error=False)
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with legacy settings (dynamo=False, opset_version=11)
safe_onnx_export(model, (x, ), f.name, skip_on_error=False)
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with minimal settings as last resort
safe_onnx_export(model, (x, ), f.name, skip_on_error=False)
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround...
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=17
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=16
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=15
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=14
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=13
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=11
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with legacy settings (dynamo=False, opset_version=11)
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with minimal settings as last resort
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_all_strategies_fail
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: ONNX export skipped due to known upstream issue (onnx_ir.serde.SerdeError). This is caused by a bug in the onnx_ir package where boolean allowzero attributes cannot be serialized. All workarounds failed. Consider updating packages: pip install --upgrade onnx onnxscript onnx_ir
result = safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_pytest_environment_detection
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround...
safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_pytest_environment_detection
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=17
safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_pytest_environment_detection
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=16
safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_pytest_environment_detection
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=15
safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_pytest_environment_detection
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=14
safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_pytest_environment_detection
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=13
safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_pytest_environment_detection
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=11
safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_pytest_environment_detection
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with legacy settings (dynamo=False, opset_version=11)
safe_onnx_export(model, (x, ), f.name,
test/test_onnx.py::test_pytest_environment_detection
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with minimal settings as last resort
safe_onnx_export(model, (x, ), f.name,
test/test_warnings.py::test_warning_cache
/usr/lib/python3/dist-packages/pluggy/_callers.py:121: UserWarning: test
res = hook_impl.function(*args)
test/test_warnings.py::test_warning_cache
/usr/lib/python3/dist-packages/pluggy/_callers.py:121: UserWarning: test2
res = hook_impl.function(*args)