#1143695 rna-star: FTBFS: readLoad.cpp:19:14: error: no match for 'operator>>' (operand types are 'std::istringstream' {aka 'std::__cxx11::basic_istringstream<char>'} and 'char*')

#1143695#5
Date:
2026-08-05 11:25:09 UTC
From:
To:
Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202608/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:rna-star, so that this is still
visible in the BTS web page for this package.

Thanks.
--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --sourcedirectory=source
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd source; /usr/bin/make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/source'
'rm' -f *.o opal/opal.o STAR STARstatic STARlong Depend.list parametersDefault.xxd
make[2]: Leaving directory '/<<PKGBUILDDIR>>/source'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--sourcedirectory=source
   dh_clean -O--sourcedirectory=source
 debian/rules binary
dh binary --sourcedirectory=source
   dh_update_autotools_config -O--sourcedirectory=source
   dh_autoreconf -O--sourcedirectory=source

[... snipped ...]

            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::_Setfill<_CharT>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 31: ‘template<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Setprecision)’
      /usr/include/c++/16/iomanip:212:5:
        212 |     operator>>(basic_istream<_CharT, _Traits>& __is, _Setprecision __f)
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   cannot convert ‘((*(((ReadAlignChunk*)this)->ReadAlignChunk::chunkIn + ((sizetype)(imate * 8)))) + ((sizetype)((ReadAlignChunk*)this)->ReadAlignChunk::chunkInSizeBytesTotal.std::array<long long unsigned int, 3>::operator[](((std::array<long long unsigned int, 3>::size_type)imate))))’ (type ‘char*’) to type ‘std::_Setprecision’
          ReadAlignChunk_processChunks.cpp:166:75:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                           ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    • candidate 32: ‘template<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Setw)’
      /usr/include/c++/16/iomanip:242:5:
        242 |     operator>>(basic_istream<_CharT, _Traits>& __is, _Setw __f)
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   cannot convert ‘((*(((ReadAlignChunk*)this)->ReadAlignChunk::chunkIn + ((sizetype)(imate * 8)))) + ((sizetype)((ReadAlignChunk*)this)->ReadAlignChunk::chunkInSizeBytesTotal.std::array<long long unsigned int, 3>::operator[](((std::array<long long unsigned int, 3>::size_type)imate))))’ (type ‘char*’) to type ‘std::_Setw’
          ReadAlignChunk_processChunks.cpp:166:75:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                           ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    • candidate 33: ‘template<class _CharT, class _Traits, class _MoneyT> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Get_money<_MoneyT>)’
      /usr/include/c++/16/iomanip:276:5:
        276 |     operator>>(basic_istream<_CharT, _Traits>& __is, _Get_money<_MoneyT> __f)
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::_Get_money<_MoneyT>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 34: ‘template<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Get_time<_CharT>)’
      /usr/include/c++/16/iomanip:430:5:
        430 |     operator>>(basic_istream<_CharT, _Traits>& __is, _Get_time<_CharT> __f)
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::_Get_time<_CharT>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
In file included from /usr/include/c++/16/random:55,
                 from ReadAlign.h:20,
                 from ReadAlignChunk.h:6:
    • candidate 35: ‘template<class _IntType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, uniform_int_distribution<_IntType>&)’
      /usr/include/c++/16/bits/random.tcc:1059:5:
       1059 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::uniform_int_distribution<_IntType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 36: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, uniform_real_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:1120:5:
       1120 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::uniform_real_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 37: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, cauchy_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:2297:5:
       2297 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::cauchy_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
In file included from /usr/include/c++/16/random:53:
    • candidate 38: ‘template<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, bernoulli_distribution&)’
      /usr/include/c++/16/bits/random.h:4543:5:
       4543 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   cannot convert ‘((*(((ReadAlignChunk*)this)->ReadAlignChunk::chunkIn + ((sizetype)(imate * 8)))) + ((sizetype)((ReadAlignChunk*)this)->ReadAlignChunk::chunkInSizeBytesTotal.std::array<long long unsigned int, 3>::operator[](((std::array<long long unsigned int, 3>::size_type)imate))))’ (type ‘char*’) to type ‘std::bernoulli_distribution&’
          ReadAlignChunk_processChunks.cpp:166:75:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                           ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    • candidate 39: ‘template<class _IntType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, geometric_distribution<_IntType>&)’
      /usr/include/c++/16/bits/random.tcc:1262:5:
       1262 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::geometric_distribution<_IntType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 40: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, exponential_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:1913:5:
       1913 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::exponential_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 41: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, weibull_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:2691:5:
       2691 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::weibull_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 42: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, extreme_value_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:2765:5:
       2765 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::extreme_value_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 43: ‘template<class _UIntType, _UIntType __a, _UIntType __c, _UIntType __m, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, linear_congruential_engine<_UIntType, __a, __c, __m>&)’
      /usr/include/c++/16/bits/random.tcc:177:5:
        177 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::linear_congruential_engine<_UIntType, __a, __c, __m>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 44: ‘template<class _UIntType1, long unsigned int __w1, long unsigned int __n1, long unsigned int __m1, long unsigned int __r1, _UIntType1 __a1, long unsigned int __u1, _UIntType1 __d1, long unsigned int __s1, _UIntType1 __b1, long unsigned int __t1, _UIntType1 __c1, long unsigned int __l1, _UIntType1 __f1, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, mersenne_twister_engine<_UIntType, __w, __n, __m, __r, __a, __u, __d, __s, __b, __t, __c, __l, __f>&)’
      /usr/include/c++/16/bits/random.tcc:504:5:
        504 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::mersenne_twister_engine<_UIntType, __w, __n, __m, __r, __a, __u, __d, __s, __b, __t, __c, __l, __f>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 45: ‘template<class _UIntType, long unsigned int __w, long unsigned int __s, long unsigned int __r, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, subtract_with_carry_engine<_UIntType, __w, __s, __r>&)’
      /usr/include/c++/16/bits/random.tcc:659:5:
        659 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::subtract_with_carry_engine<_UIntType, __w, __s, __r>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 46: ‘template<class _RandomNumberEngine, long unsigned int __p, long unsigned int __r, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, discard_block_engine<_RandomNumberEngine, __p, __r>&)’
      /usr/include/c++/16/bits/random.tcc:726:5:
        726 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::discard_block_engine<_RandomNumberEngine, __p, __r>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 47: ‘template<class _RandomNumberEngine, long unsigned int __k, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, shuffle_order_engine<_RandomNumberEngine, __k>&)’
      /usr/include/c++/16/bits/random.tcc:893:5:
        893 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::shuffle_order_engine<_RandomNumberEngine, __k>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 48: ‘template<class _IntType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, negative_binomial_distribution<_IntType>&)’
      /usr/include/c++/16/bits/random.tcc:1377:5:
       1377 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::negative_binomial_distribution<_IntType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 49: ‘template<class _IntType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, poisson_distribution<_IntType>&)’
      /usr/include/c++/16/bits/random.tcc:1587:5:
       1587 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::poisson_distribution<_IntType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 50: ‘template<class _IntType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, binomial_distribution<_IntType>&)’
      /usr/include/c++/16/bits/random.tcc:1854:5:
       1854 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::binomial_distribution<_IntType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 51: ‘template<class _RealType1, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, normal_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:2075:5:
       2075 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::normal_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 52: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, lognormal_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:2140:5:
       2140 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::lognormal_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 53: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, chi_squared_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:2211:5:
       2211 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::chi_squared_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 54: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, fisher_f_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:2373:5:
       2373 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::fisher_f_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 55: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, student_t_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:2446:5:
       2446 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::student_t_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 56: ‘template<class _RealType1, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, gamma_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:2616:5:
       2616 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::gamma_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 57: ‘template<class _IntType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, discrete_distribution<_IntType>&)’
      /usr/include/c++/16/bits/random.tcc:2924:5:
       2924 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::discrete_distribution<_IntType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 58: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, piecewise_constant_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:3131:5:
       3131 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::piecewise_constant_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
    • candidate 59: ‘template<class _RealType, class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, piecewise_linear_distribution<_RealType>&)’
      /usr/include/c++/16/bits/random.tcc:3337:5:
       3337 |     operator>>(std::basic_istream<_CharT, _Traits>& __is,
            |     ^~~~~~~~
      • template argument deduction/substitution failed:
        •   mismatched types ‘std::piecewise_linear_distribution<_RealType>’ and ‘char*’
          ReadAlignChunk_processChunks.cpp:166:105:
            166 |                                 P.inOut->readIn[imate] >> (chunkIn[imate] + chunkInSizeBytesTotal[imate]);
                |                                                                                                         ^
make[2]: *** [Makefile:97: ReadAlignChunk_processChunks.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/source'
dh_auto_build: error: cd source && make -j2 INSTALL="install --strip-program=true" SFX=-sse3 CCFLAGS_common_add="-flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" CXXFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -msse3" LDFLAGS_add="-Wl,-z,relro -Wl,-z,now" STAR-sse3 STARlong-sse3 returned exit code 2
make[1]: *** [debian/rules:26: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:21: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------

#1143695#10
Date:
2026-08-19 15:19:31 UTC
From:
To:
We believe that the bug you reported is fixed in the latest version of
rna-star, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1143695@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sascha Steinbiss <satta@debian.org> (supplier of updated rna-star package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Wed, 19 Aug 2026 09:27:56 +0200
Source: rna-star
Architecture: source
Version: 2.7.11b+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Closes: 1143695
Changes:
 rna-star (2.7.11b+dfsg-3) unstable; urgency=medium
 .
   * Update salsa-ci.yml to current Debian Med version.
   * Add patch to fix building with new C++ standard. (Closes: #1143695)
   * Bump copyright date for debian/ directory.
   * Use correct email address in d/copyright.
   * Bump Standards-Version.
   * Remove obsolete Priority from d/control.
Checksums-Sha1:
 e1ab51ff09a99f00a97cc380170003632b1a8633 2162 rna-star_2.7.11b+dfsg-3.dsc
 350d9990fe5fdea351d7e878d573d01bd60a3b12 380076 rna-star_2.7.11b+dfsg-3.debian.tar.xz
 48c27a115262eea54632adb5807ae965e08abded 8474 rna-star_2.7.11b+dfsg-3_amd64.buildinfo
Checksums-Sha256:
 868bbdb9373d4bd7ffbcb62e6dcd438434d040bdd0d7eb9da11cbe8d78b84781 2162 rna-star_2.7.11b+dfsg-3.dsc
 af1a44e5875eb13d9ca97bf62b8a01c13139239df04a01ef93a3a00aa1922b50 380076 rna-star_2.7.11b+dfsg-3.debian.tar.xz
 900c4793543be54eae14ba2a65ffada3f9ad28269bfab2358d9b8da81968019e 8474 rna-star_2.7.11b+dfsg-3_amd64.buildinfo
Files:
 533b1bf897f0680daf309b9c6abe1a63 2162 science optional rna-star_2.7.11b+dfsg-3.dsc
 b49eabd34f5131e962a09a3ffa8e7bb3 380076 science optional rna-star_2.7.11b+dfsg-3.debian.tar.xz
 24ccde5de65dac392e68569656fc5584 8474 science optional rna-star_2.7.11b+dfsg-3_amd64.buildinfo
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