#1144148 qtltools lost its r-mathlib dependency

Package:
qtltools
Source:
qtltools
Description:
Tool set for molecular QTL discovery and analysis
Submitter:
Adrian Bunk
Date:
2026-08-13 15:37:02 UTC
Severity:
normal
#1144148#5
Date:
2026-08-11 15:56:32 UTC
From:
To:
https://tracker.debian.org/pkg/qtltools

Migration status for qtltools (1.3.1+dfsg-4 to 1.3.1+dfsg-5): BLOCKED: Rejected/violates migration policy/introduces a regression
Issues preventing migration:
∙ ∙ Autopkgtest for qtltools/1.3.1+dfsg-5: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Regression ♻ (reference ♻)


...
 69s QTLtools: error while loading shared libraries: libRmath.so: cannot open shared object file: No such file or directory
 69s Error: Command not found
...


Due to:

$ debdiff qtltools_1.3.1+dfsg-4+b4_amd64.deb  qtltools_1.3.1+dfsg-5_amd64.deb
...
Depends: libblas3 | libblas.so.3, libboost-iostreams1.90.0 (>= 1.90.0), libboost-program-options1.90.0 (>= 1.90.0), libc6 (>= 2.38), libgcc-s1 (>= 4.0), libgsl28 (>= 2.8+dfsg), libhts3t64 (>= 1.17), libstdc++6 (>= 13.1), [-r-mathlib (>= 4.5.2),-] r-base-core
...

#1144148#10
Date:
2026-08-13 15:12:26 UTC
From:
To:
Hello,

Bug #1144148 in qtltools reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/qtltools/-/commit/a703fb0c45142389560e01cc23e4b366a243b861

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1144148

#1144148#17
Date:
2026-08-13 15:34:29 UTC
From:
To:
We believe that the bug you reported is fixed in the latest version of
qtltools, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1144148@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated qtltools package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Thu, 13 Aug 2026 17:02:09 +0200
Source: qtltools
Architecture: source
Version: 1.3.1+dfsg-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Closes: 1144148
Changes:
 qtltools (1.3.1+dfsg-6) unstable; urgency=medium
 .
   * Team upload.
   * Explicitly Depends: r-mathlib (which was lost for whatever reason)
     Closes: #1144148
Checksums-Sha1:
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Files:
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 a35e74234e3980fad40625a1f7517b51 13556308 science optional qtltools_1.3.1+dfsg-6.debian.tar.xz
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