severity: important
control: clone -1 -2
control: reassign -1 serious-sam-tse

Hi,

We could safely remove depends on sse2-support

I plan to drop this package for forky

rouca

Hello,

Bug #1144278 in sortmerna reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/med-team/sortmerna/-/commit/6f0f4013dda97659f58bdf0476132e9c079d6198

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1144278

We believe that the bug you reported is fixed in the latest version of
sortmerna, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1144278@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated sortmerna package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Mon, 19 Oct 2026 21:47:24 +0200
Source: sortmerna
Architecture: source
Version: 7.1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Closes: 1072346 1144278
Changes:
 sortmerna (7.1.0-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.7.4 (routine-update)
   * Reflow Uploaders field (cme)
   * Remove Priority field (cme)
   * Set upstream metadata fields: Bug-Database, Repository-Browse.
   * debputy lint --auto-fix (routine-update)
   * Drop sse2-support dependency
     Closes: #1144278
   * Set upstream metadata fields: Bug-Submit, Repository-Browse.
   * d/control:
      - add build-deps librapidarchive-dev, libparasail-dev, libbbhash-dev and
        zlib1g-dev
      - drop rapidjson-dev and libconcurrentqueue-dev.
   * add rapidarchive.patch: use system librapidarchive
   * add smr-api-disable.patch: skip the self-contained static bundle,
       which needs static parasail/rocksdb not available in Debian
   * d/copyright: drop the ssw.c stanza, SSW was removed upstream
   * d/man/sortmerna.1: update for the 7.1.0 command line
   * d/tests: rewrite the autopkgtest to run the binary end-to-end against the
     upstream tiny/small reference data (FASTA, SAM, BLAST and gzip input) and
     drop the "superficial" restriction.
     Closes: #1072346
   * Build on big endian 64 architectures (upstream supports AMD64 and ARM64)
   * Drop the i386-only -msse2 workaround.  i386 cannot be built anyway because
     libbbhash-dev is not available there.
   * d/rules: build with CMake directly instead of pybuild.  Newer dh-python
     delegates to CMake, but older versions (as in trixie) run "setup.py
     clean", which the upstream setup.py does not implement, so the build
     failed on arm64.
   * d/tests: only copy the test data files that are actually needed.
   * d/salsa-ci.yml:
      - Do not build on i386
      - Do not fail on blhc
Checksums-Sha1:
 f1c2cf38a36a6384930cb69f0fe4c00bfe44bffc 2273 sortmerna_7.1.0-1.dsc
 b65158e99d898bf477245c7567cbfb4b2c0512be 31463307 sortmerna_7.1.0.orig.tar.gz
 b30c181eba54eeb78aca18a61cb84f33ab1883b6 14016 sortmerna_7.1.0-1.debian.tar.xz
 a2d9576b221dbbf660c474cb9d50179a85c7feba 7757 sortmerna_7.1.0-1_amd64.buildinfo
Checksums-Sha256:
 7653055a70b26b3eb509651f63349076337f670e221cf3687f62da974f9dcf47 2273 sortmerna_7.1.0-1.dsc
 110917dd5b5669ad045e84195d164a11d1f65e9ee733ed425d6ee796886809da 31463307 sortmerna_7.1.0.orig.tar.gz
 e05cdf3804661e4b739f0e95dba3287dafaeeab41eede45f0e5a667fc0c189aa 14016 sortmerna_7.1.0-1.debian.tar.xz
 5567dbcf33880092391dde7fd9668d4acc857ee8e22265f8212289c7397f6d62 7757 sortmerna_7.1.0-1_amd64.buildinfo
Files:
 7d05ed24fbc6f5ec2a6dede1f4a71fe2 2273 science optional sortmerna_7.1.0-1.dsc
 2cb6e33ee672608775fe44f65fd9bcbb 31463307 science optional sortmerna_7.1.0.orig.tar.gz
 8393b19978377be51a6feb283d4bdf9f 14016 science optional sortmerna_7.1.0-1.debian.tar.xz
 9a3af88d5fbaf118ad6d7e5d4b3bff5d 7757 science optional sortmerna_7.1.0-1_amd64.buildinfo
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