Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202608/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:pigx-rnaseq, so that this is still
visible in the BTS web page for this package.

Thanks.
--------------------------------------------------------------------------------
[...]
[Thu Aug 13 09:35:59 2026]
Finished job 48.
8 of 49 steps (16%) done
[Thu Aug 13 09:36:05 2026]
Error in rule check_annotation_files:
    jobid: 1
    input: /<<PKGBUILDDIR>>/tests/sample_data/sample.fasta, /<<PKGBUILDDIR>>/tests/sample_data/sample.cdna.fasta, /<<PKGBUILDDIR>>/tests/sample_data/sample.gtf
    output: /<<PKGBUILDDIR>>/tests/output/input_annotation_stats.tsv
    log: /<<PKGBUILDDIR>>/tests/output/logs/check_annotation_files.log (check log file(s) for error details)
    shell:
        /usr/bin/Rscript --vanilla /<<PKGBUILDDIR>>/scripts//validate_input_annotation.R /<<PKGBUILDDIR>>/tests/sample_data/sample.gtf /<<PKGBUILDDIR>>/tests/sample_data/sample.cdna.fasta /<<PKGBUILDDIR>>/tests/sample_data/sample.fasta /<<PKGBUILDDIR>>/tests/output >> /<<PKGBUILDDIR>>/tests/output/logs/check_annotation_files.log 2>&1
        (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2026-08-13T093557.316311.snakemake.log
ERROR: could not find report for SALMON at transcript level
make[1]: *** [debian/rules:39: override_dh_auto_test] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:11: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------

user debian-python@lists.debian.org
usertags 1144305 python3.15
thanks

Hi!

While rebuilding the python related packages against the Python 3.15rc2
version we ran into this FTBFS:
https://debusine.debian.net/debian/r-python-python3.15/artifact/4856605/

Please consider investigating the root cause to get this package back in
a healthy state.

We believe that the bug you reported is fixed in the latest version of
pigx-rnaseq, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1144305@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated pigx-rnaseq package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Sun, 18 Oct 2026 07:52:28 +0200
Source: pigx-rnaseq
Architecture: source
Version: 0.1.1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Closes: 1144305
Changes:
 pigx-rnaseq (0.1.1-4) unstable; urgency=medium
 .
   * Team upload.
   * Add r-bioc-genomeinfodb to Build-Depends and Depends.
     Closes: #1144305
   * Standards-Version: 4.7.4 (routine-update)
   * Reflow Uploaders field (cme)
   * Remove 2 redundant dependencies from weaker fields.
Checksums-Sha1:
 7487ee45881877bf32f661d301165b0a446da063 2745 pigx-rnaseq_0.1.1-4.dsc
 6bf094e8b6a2db9a5095dc7464d0136e3682a656 15568 pigx-rnaseq_0.1.1-4.debian.tar.xz
 035d0bd39dbd2264ff3126c663b7823f06653c9d 26001 pigx-rnaseq_0.1.1-4_amd64.buildinfo
Checksums-Sha256:
 57837d963c741c986fe6eb8aff597d0e33b0dfd6067d68322b1b35d6b0453736 2745 pigx-rnaseq_0.1.1-4.dsc
 04680a39f5e075ea56d5c7f4740f077b5667f299b46a95e51056c7991bccc20a 15568 pigx-rnaseq_0.1.1-4.debian.tar.xz
 7304c4de8da34909642daeca47bd8f3589dff77114e49f3c54b7abcb0fda67b4 26001 pigx-rnaseq_0.1.1-4_amd64.buildinfo
Files:
 79652ef941f2431cfb04547d3ad89809 2745 science optional pigx-rnaseq_0.1.1-4.dsc
 4e2d2a17ba9a986aa4c72aea5f19f5a7 15568 science optional pigx-rnaseq_0.1.1-4.debian.tar.xz
 0ca9b83a3d62993c4926f2494d17e144 26001 science optional pigx-rnaseq_0.1.1-4_amd64.buildinfo
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