Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202608/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:kerchunk, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <AsyncGroup <FsspecStore(ReferenceFileSystem, /)>>, key = 'FP_line'
async def getitem(
self,
key: str,
) -> AnyAsyncArray | AsyncGroup:
"""
Get a subarray or subgroup from the group.
Parameters
----------
key : str
Array or group name
Returns
-------
AsyncArray or AsyncGroup
"""
store_path = self.store_path / key
logger.debug("key=%s, store_path=%s", key, store_path)
# Consolidated metadata lets us avoid some I/O operations so try that first.
if self.metadata.consolidated_metadata is not None:
return self._getitem_consolidated(store_path, key, prefix=self.name)
try:
return await get_node(
store=store_path.store, path=store_path.path, zarr_format=self.metadata.zarr_format
)
except FileNotFoundError as e:
/usr/lib/python3/dist-packages/zarr/core/group.py:737: KeyError
During handling of the above exception, another exception occurred:
def test1():
here = os.path.dirname(__file__)
fn = os.path.join(here, "MOD14.hdf4")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
../../../tests/test_hdf4.py:13:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
kerchunk/hdf4.py:149: in translate
arr = g.require_array(
/usr/lib/python3/dist-packages/zarr/core/group.py:2823: in require_array
return Array(self._sync(self._async_group.require_array(name, shape=shape, **kwargs)))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/zarr/core/sync.py:199: in _sync
return sync(
/usr/lib/python3/dist-packages/zarr/core/sync.py:154: in sync
raise return_result
/usr/lib/python3/dist-packages/zarr/core/sync.py:114: in _runner
return await coro
^^^^^^^^^^
/usr/lib/python3/dist-packages/zarr/core/group.py:1268: in require_array
ds = await self.create_array(name, shape=shape, dtype=dtype, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/zarr/core/group.py:1199: in create_array
return await create_array(
/usr/lib/python3/dist-packages/zarr/core/array.py:4743: in create_array
return await init_array(
/usr/lib/python3/dist-packages/zarr/core/array.py:4476: in init_array
chunks_normalized = normalize_chunks_nd(chunks, shape_parsed)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/zarr/core/chunk_grids.py:800: in normalize_chunks_nd
tuple(normalize_chunks_1d(c, span=s) for c, s in zip(chunks, shape, strict=True))
^^^^^
/usr/lib/python3/dist-packages/zarr/core/chunk_grids.py:800: in <genexpr>
tuple(normalize_chunks_1d(c, span=s) for c, s in zip(chunks, shape, strict=True))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
chunks = 0, span = 0
def normalize_chunks_1d(
chunks: int | Iterable[object], span: int
) -> np.ndarray[tuple[int], np.dtype[np.int64]]:
"""
Normalize a one-dimensional chunk specification into a 1D int64 array of
chunk sizes that cover the span.
`-1` means "one chunk covering the entire span."
For an integer chunk size, all chunks are uniform — the last chunk may
overhang the span. The actual data extent of each chunk is determined
by the chunk grid at runtime, not by this function.
"""
if chunks == -1:
return np.array([span], dtype=np.int64)
if isinstance(chunks, int):
if chunks <= 0:
/usr/lib/python3/dist-packages/zarr/core/chunk_grids.py:736: ValueError
=============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1464
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:1464: PytestConfigWarning: Unknown config option: asyncio_default_fixture_loop_scope
self._warn_or_fail_if_strict(f"Unknown config option: {key}\n")
../../../tests/test_fits.py:18
/<<PKGBUILDDIR>>/tests/test_fits.py:18: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.remotedata
../../../tests/test_fits.py:43
/<<PKGBUILDDIR>>/tests/test_fits.py:43: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.remotedata
../../../tests/test_grib.py:57
/<<PKGBUILDDIR>>/tests/test_grib.py:57: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.remotedata
../../../tests/test_grib.py:287
/<<PKGBUILDDIR>>/tests/test_grib.py:287: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.remotedata
../../../tests/test_grib.py:305
/<<PKGBUILDDIR>>/tests/test_grib.py:305: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.remotedata
../../../../../../usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:36
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:36: UserWarning: h5py is running against HDF5 2.2.0 when it was built against 2.1.0, this may cause problems
_warn(("h5py is running against HDF5 {0} when it was built against {1}, "
../../../tests/test_hdf.py:24
/<<PKGBUILDDIR>>/tests/test_hdf.py:24: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.remotedata
../../../tests/test_hdf.py:45
/<<PKGBUILDDIR>>/tests/test_hdf.py:45: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.remotedata
../../../tests/test_hdf.py:87
/<<PKGBUILDDIR>>/tests/test_hdf.py:87: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.remotedata
tests/test_combine.py::test_fixture
/<<PKGBUILDDIR>>/tests/test_combine.py:251: ZarrUserWarning: fs (<fsspec.implementations.reference.ReferenceFileSystem object at 0x7f5803158cd0>) was not created with `asynchronous=True`, this may lead to surprising behavior
store = zarr.storage.FsspecStore(fs)
tests/test_combine.py::test_fixture
/usr/lib/python3/dist-packages/zarr/storage/_fsspec.py:258: ZarrUserWarning: fs (<fsspec.implementations.reference.ReferenceFileSystem object at 0x7f5803158cd0>) was not created with `asynchronous=True`, this may lead to surprising behavior
return type(self)(
tests/test_combine.py::test_chunk_error
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_kerchunk/build/kerchunk/combine.py:403: UserWarning: Concatenated coordinate 'time' contains less than expectednumber of values across the datasets: [1]
warnings.warn(
tests/test_grib.py::test_grib_tree
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_kerchunk/build/kerchunk/combine.py:403: UserWarning: Concatenated coordinate 'time' contains less than expectednumber of values across the datasets: [1665709200]
warnings.warn(
tests/test_grib.py::test_grib_tree
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_kerchunk/build/kerchunk/combine.py:403: UserWarning: Concatenated coordinate 'step' contains less than expectednumber of values across the datasets: [0.25]
warnings.warn(
tests/test_grib.py::test_hrrr_subhf_corrected_grib_tree
tests/test_grib.py::test_hrrr_sfcf_grib_tree
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_kerchunk/build/kerchunk/combine.py:403: UserWarning: Concatenated coordinate 'time' contains less than expectednumber of values across the datasets: [1695862800]
warnings.warn(