Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202609/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:r-bioc-alabaster.base, so that this is still
visible in the BTS web page for this package.

Thanks.
--------------------------------------------------------------------------------
[...]
x86_64-linux-gnu-g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/assorthead/include' -I'/usr/lib/R/site-library/Rhdf5lib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -c vls.cpp -o vls.o
x86_64-linux-gnu-g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o alabaster.base.so RcppExports.o check_csv.o check_list.o choose_numeric_missing_placeholder.o is_rfc3339.o load_csv.o load_list.o validate.o vls.o /usr/lib/R/site-library/Rhdf5lib/lib/libhdf5_cpp.a /usr/lib/R/site-library/Rhdf5lib/lib/libhdf5.a -L/usr/lib/R/site-library/Rhdf5lib/lib -lsz -lm -ldl -lcurl -lssl -lcrypto -lz -L/usr/lib/R/lib -lR
/usr/bin/x86_64-linux-gnu-ld.bfd: cannot find -lcurl: No such file or directory
/usr/bin/x86_64-linux-gnu-ld.bfd: cannot find -lssl: No such file or directory
/usr/bin/x86_64-linux-gnu-ld.bfd: cannot find -lcrypto: No such file or directory
collect2: error: ld returned 1 exit status
make[1]: *** [/usr/share/R/share/make/shlib.mk:10: alabaster.base.so] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
ERROR: compilation failed for package ‘alabaster.base’
* removing ‘/<<PKGBUILDDIR>>/debian/r-bioc-alabaster.base/usr/lib/R/site-library/alabaster.base’
dh_auto_install: error: R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-alabaster.base-1.12.1\+dfsg/debian/r-bioc-alabaster.base/usr/lib/R/site-library --clean . --built-timestamp="'Wed, 12 Aug 2026 11:03:42 +0900'" returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------

Hello,

Bug #1148204 in r-bioc-alabaster.base reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/r-pkg-team/r-bioc-alabaster.base/-/commit/10dc153c1a06403cf563895d1682c6cfe217ac85
------------------------------------------------------------------------
Build-depend on libcurl4-openssl-dev.

Closes: #1148204
------------------------------------------------------------------------

(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1148204

We believe that the bug you reported is fixed in the latest version of
r-bioc-alabaster.base, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1148204@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <plessy@debian.org> (supplier of updated r-bioc-alabaster.base package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Mon, 28 Sep 2026 10:59:33 +0900
Source: r-bioc-alabaster.base
Architecture: source
Version: 1.12.1+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Charles Plessy <plessy@debian.org>
Closes: 1148204
Changes:
 r-bioc-alabaster.base (1.12.1+dfsg-2) unstable; urgency=medium
 .
   * Team upload.
   * Packaging update (routine-update)
   * Build-depend on libcurl4-openssl-dev.  Closes: #1148204
Checksums-Sha1:
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 44c8fe1e687af45c73712bbed8f4ac1546cfff5e 3948 r-bioc-alabaster.base_1.12.1+dfsg-2.debian.tar.xz
 803d8f73c88a14a451bd354c3b75d3616c0899f7 13171 r-bioc-alabaster.base_1.12.1+dfsg-2_amd64.buildinfo
Checksums-Sha256:
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 2b58843ec2fc05bd61d44b24018451e277bb1829a6d183e3b2bf0b5cb072c59f 3948 r-bioc-alabaster.base_1.12.1+dfsg-2.debian.tar.xz
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Files:
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 e0f246c6ef979e68aaab0dc0022e959f 3948 gnu-r optional r-bioc-alabaster.base_1.12.1+dfsg-2.debian.tar.xz
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