#1149405 cdk: FTBFS: [ERROR] /<<PKGBUILDDIR>>/storage/smiles/src/main/java/org/openscience/cdk/smiles/SmilesParser.java:[338,43] incompatible types: boolean cannot be converted to uk.ac.ebi.beam.Mode

Package:
src:cdk
Source:
src:cdk
Submitter:
Santiago Vila
Date:
2026-10-01 06:51:02 UTC
Severity:
normal
Tags:
#1149405#5
Date:
2026-09-29 22:18:59 UTC
From:
To:
Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202609/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:cdk, so that this is still
visible in the BTS web page for this package.

Thanks.
--------------------------------------------------------------------------------
[...]
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  18.662 s
[INFO] Finished at: 2026-09-29T22:05:51Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.13.0:compile (default-compile) on project cdk-smiles: Compilation failure
[ERROR] /<<PKGBUILDDIR>>/storage/smiles/src/main/java/org/openscience/cdk/smiles/SmilesParser.java:[338,43] incompatible types: boolean cannot be converted to uk.ac.ebi.beam.Mode
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <args> -rf :cdk-smiles
dh_auto_build: error: /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>> -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------

#1149405#12
Date:
2026-10-01 06:49:48 UTC
From:
To:
We believe that the bug you reported is fixed in the latest version of
cdk, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1149405@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andrius Merkys <merkys@debian.org> (supplier of updated cdk package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Thu, 01 Oct 2026 02:11:02 -0400
Source: cdk
Architecture: source
Version: 1:2.13-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Java Maintainers <pkg-java-maintainers@lists.alioth.debian.org>
Changed-By: Andrius Merkys <merkys@debian.org>
Closes: 1149405
Changes:
 cdk (1:2.13-1) unstable; urgency=medium
 .
   * New upstream version 2.13
   * Adjust to the removal of a pair of POMs.
   * Fix API incompatibility with libbeam-java (Closes: #1149405)
Checksums-Sha1:
 1111816652a8a71854541bd0e7fd161895620cc1 2019 cdk_2.13-1.dsc
 600986a17689d10ff94867c50abe3441c59d4f50 22994581 cdk_2.13.orig.tar.gz
 cf16638246272f08ca09f4538e4ec0a56e24b5a4 15924 cdk_2.13-1.debian.tar.xz
 05bcbe1fae7f20a9ad4813b4dd1652c1214f834f 4874 cdk_2.13-1_source.buildinfo
Checksums-Sha256:
 7edf97d124c780e79714b7a987eabb87b606ea60ce4101121b40509ffb41c3c4 2019 cdk_2.13-1.dsc
 670f85a678ad9d63449079d9abb961db6c5b24c05391fd2f4125e27dd64886c3 22994581 cdk_2.13.orig.tar.gz
 a1f3d8ffa6d1cab88adb2debce4841f0e87132a1e39863ec88378ce237c74fd9 15924 cdk_2.13-1.debian.tar.xz
 d0fc911b090fdaf9bb97b0f9167ef1d47fb699c9c1d6f539ed35269403225615 4874 cdk_2.13-1_source.buildinfo
Files:
 5b38a8222156fa8af89a8470545c6315 2019 java optional cdk_2.13-1.dsc
 3e501c77e06db804fd04893b4007e05b 22994581 java optional cdk_2.13.orig.tar.gz
 8c15545d946ad7a367997061bc44ae1f 15924 java optional cdk_2.13-1.debian.tar.xz
 eb7c40fdd335e629d32691cbf9391965 4874 java optional cdk_2.13-1_source.buildinfo
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