* Package name    : python-oncoref
* URL             : https://github.com/pirl-unc/oncoref
* License         : Apache-2.0
  Programming Lang: Python
  Description     : Curated cancer reference data: ontology, TMB, incidence/mortality, and expression

To be maintained by the Debian Med team at
https://salsa.debian.org/med-team/python-oncoref

This is an automated message from the Debian DFSG, Licensing & New
Packages Team.

The Debian NEW review of python-oncoref 1.8.207-1 has been completed.

Decision: ACCEPTED
Reviewer: Andrew McMillan

Review comment:

Hi,

Only one minor issue noted...

validate-retired-driver-symbols.patch fixes an upstream bug but is marked Forwarded: no

Files: debian/patches/validate-retired-driver-symbols.patch
Evidence: Forwarded: no on a patch that fixes an upstream validation failure (CBWD3 -> ZNG1C) in oncoref/drivers.py.
Problem: This is a genuine upstream bug that also affects PyPI users; keeping it Debian-only adds permanent patch maintenance. (test-installed-builder-audit.patch is correctly Debian-specific.)
Fix: Submit the fix upstream (small, already regression-tested in debian/tests/test_driver_symbols.py) and update Forwarded: when accepted.


Thanks!

Full review details: https://dfsg-new-queue.debian.org/reviews/python-oncoref

We believe that the bug you reported is fixed in the latest version of
python-oncoref, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1150263@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Steffen Moeller <moeller@debian.org> (supplier of updated python-oncoref package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Sat, 10 Oct 2026 15:21:41 +0200
Source: python-oncoref
Binary: oncoref python3-oncoref
Architecture: source all
Version: 1.8.207-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
 oncoref    - command-line tools for curated cancer reference data
 python3-oncoref - curated cancer reference data and analysis tools (Python library)
Closes: 1150263
Changes:
 python-oncoref (1.8.207-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #1150263)
     - Python library and curated tables in python3-oncoref; command-line
       interface and manual page in a separate oncoref binary package.
     - Offline unit tests and installed-package autopkgtests.
     - Fix driver-evidence validation for retired source gene symbols.
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