#1150445 prody: FTBFS: E Expected {~{'and'} ~{'or'} W:(#$',.0-;@-Z_-z~)}, found 'or' (at char 8), (line:1, col:9)

Package:
src:prody
Source:
src:prody
Submitter:
Santiago Vila
Date:
2026-10-09 18:16:22 UTC
Severity:
normal
Tags:
#1150445#5
Date:
2026-10-09 18:13:41 UTC
From:
To:
Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202610/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:prody, so that this is still
visible in the BTS web page for this package.

Thanks.
--------------------------------------------------------------------------------
[...]
E                     ^ parsing failed here
E           Expected {~{'and'} ~{'or'} W:(#$',.0-;@-Z_-z~)}, found 'or'  (at char 8), (line:1, col:9)

prody/atomic/select.py:1022: SelectionError
------------------------------ Captured log call -------------------------------
DEBUG    .prody:logger.py:135 12793 atoms and 1 coordinate set(s) were parsed in 0.15s.
=============================== warnings summary ===============================
prody/atomic/flags.py:532
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/flags.py:532: SyntaxWarning: "\ " is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\ "? A raw string is also an option.
    \                            *PDB*  *Source*  *Conflict*

prody/atomic/select.py:203
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:203: SyntaxWarning: "\|" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\|"? A raw string is also an option.
    **Special characters** (``~!@#$%^&*()-_=+[{}]\|;:,<>./?()'"``) must be

prody/atomic/select.py:758
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:758: SyntaxWarning: "\ " is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\ "? A raw string is also an option.
    RE_NRANGE = re_compile(_ + '\ *(to|:)\ *' + _)

prody/atomic/select.py:735
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:735: PyparsingDeprecationWarning: 'setParseAction' deprecated - use 'set_parse_action'
    PP_SCHARS.setParseAction(specialCharsParseAction)

prody/atomic/select.py:755
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:755: PyparsingDeprecationWarning: 'setParseAction' deprecated - use 'set_parse_action'
    PP_REGEXP.setParseAction(regularExpParseAction)

prody/atomic/select.py:804
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:804: PyparsingDeprecationWarning: 'setParseAction' deprecated - use 'set_parse_action'
    PP_NRANGE.setParseAction(rangeParseAction)

prody/sequence/analysis.py:174
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/sequence/analysis.py:174: SyntaxWarning: "\{" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\{"? A raw string is also an option.
    * ``'minent'``: :math:`min\{H(X), H(Y)\}`, minimum entropy

prody/proteins/dssp.py:87
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/proteins/dssp.py:87: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option.
    * *dssp_acc*: number of water molecules in contact with this residue \*10.

prody/dynamics/pca.py:79
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/dynamics/pca.py:79: SyntaxWarning: "\_" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\_"? A raw string is also an option.
    treated specially.  Let's say **C**\_ij is the element of the

../../../../../../usr/lib/python3/dist-packages/zombie_imp/__init__.py:1
  /usr/lib/python3/dist-packages/zombie_imp/__init__.py:1: DeprecationWarning: the imp module was removed in favour of importlib. Someone brought it back, but it's not a good idea to use it.
    from .imp_3_11 import *

prody/tests/apps/test_prody_anm.py:40
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_anm.py:40: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_catdcd.py:35
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:35: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_catdcd.py:51
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:51: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_catdcd.py:78
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:78: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_catdcd.py:107
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:107: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_catdcd.py:117
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:117: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_catdcd.py:127
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:127: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_catdcd.py:136
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:136: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_examples.py:63
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_examples.py:63: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_gnm.py:39
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_gnm.py:39: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_pca.py:43
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_pca.py:43: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/apps/test_prody_pca.py:60
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_pca.py:60: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/compounds/pdbligands.py:142
prody/compounds/pdbligands.py:142
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/compounds/pdbligands.py:142: DeprecationWarning: Testing an element's truth value will always return True in future versions.  Use specific 'len(elem)' or 'elem is not None' test instead.
    if results:

prody/compounds/pdbligands.py:145
prody/compounds/pdbligands.py:145
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/compounds/pdbligands.py:145: DeprecationWarning: Testing an element's truth value will always return True in future versions.  Use specific 'len(elem)' or 'elem is not None' test instead.
    if results:

prody/compounds/pdbligands.py:224
prody/compounds/pdbligands.py:224
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/compounds/pdbligands.py:224: DeprecationWarning: Testing an element's truth value will always return True in future versions.  Use specific 'len(elem)' or 'elem is not None' test instead.
    for bond in list(root.find(ns + 'chem_comp_bondCategory') or bonds):

prody/tests/atomic/test_select.py:478
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/atomic/test_select.py:478: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_dssp.py:19
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_dssp.py:19: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_dssp.py:25
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_dssp.py:25: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_fixer.py:28
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_fixer.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_localpdb.py:23
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_localpdb.py:23: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_localpdb.py:29
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_localpdb.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_localpdb.py:39
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_localpdb.py:39: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_localpdb.py:51
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_localpdb.py:51: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_localpdb.py:73
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_localpdb.py:73: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:277
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:277: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:309
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:309: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:325
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:325: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:351
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:351: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:377
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:377: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:386
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:386: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:395
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:395: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:409
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:409: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:439
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:439: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:499
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:499: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:509
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:509: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:526
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:526: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_pdbfile.py:543
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:543: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_waterbridges.py:43
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_waterbridges.py:43: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_waterbridges.py:66
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_waterbridges.py:66: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_waterbridges.py:88
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_waterbridges.py:88: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_waterbridges.py:103
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_waterbridges.py:103: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_wwpdb.py:29
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_wwpdb.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/proteins/test_wwpdb.py:46
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_wwpdb.py:46: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @dec.slow

prody/tests/atomic/test_select.py: 35 warnings
prody/tests/ensemble/test_ensemble.py: 1 warning
prody/tests/proteins/test_ciffile.py: 3 warnings
prody/tests/proteins/test_waterbridges.py: 3 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1100: PyparsingDeprecationWarning: 'infixNotation' deprecated - use 'infix_notation'
    parser = operatorPrecedence(expr, oplist)

prody/tests/atomic/test_select.py: 35 warnings
prody/tests/ensemble/test_ensemble.py: 1 warning
prody/tests/proteins/test_ciffile.py: 3 warnings
prody/tests/proteins/test_waterbridges.py: 3 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1101: PyparsingDeprecationWarning: 'setParseAction' deprecated - use 'set_parse_action'
    parser.setParseAction(self._default)

prody/tests/atomic/test_select.py: 35 warnings
prody/tests/ensemble/test_ensemble.py: 1 warning
prody/tests/proteins/test_ciffile.py: 3 warnings
prody/tests/proteins/test_waterbridges.py: 3 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1102: PyparsingDeprecationWarning: 'leaveWhitespace' deprecated - use 'leave_whitespace'
    parser.leaveWhitespace()

prody/tests/atomic/test_select.py: 35 warnings
prody/tests/ensemble/test_ensemble.py: 1 warning
prody/tests/proteins/test_ciffile.py: 3 warnings
prody/tests/proteins/test_waterbridges.py: 3 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1103: PyparsingDeprecationWarning: 'enablePackrat' deprecated - use 'enable_packrat'
    parser.enablePackrat()

prody/tests/atomic/test_select.py: 272 warnings
prody/tests/ensemble/test_ensemble.py: 2 warnings
prody/tests/ensemble/test_functions.py: 1 warning
prody/tests/proteins/test_ciffile.py: 3 warnings
prody/tests/proteins/test_waterbridges.py: 25 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1005: PyparsingDeprecationWarning: 'parseString' deprecated - use 'parse_string'
    tokens = parser(selstr, parseAll=True)

prody/tests/atomic/test_select.py: 272 warnings
prody/tests/ensemble/test_ensemble.py: 2 warnings
prody/tests/ensemble/test_functions.py: 1 warning
prody/tests/proteins/test_ciffile.py: 3 warnings
prody/tests/proteins/test_waterbridges.py: 25 warnings
  /usr/lib/python3/dist-packages/pyparsing/util.py:466: PyparsingDeprecationWarning: 'parseAll' argument is deprecated, use 'parse_all'
    return fn(self, *args, **kwargs)

prody/tests/atomic/test_select.py: 9 warnings
prody/tests/proteins/test_waterbridges.py: 2 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1082: PyparsingDeprecationWarning: 'oneOf' deprecated - use 'one_of'
    (pp.oneOf('+ -'), 1, pp.opAssoc.RIGHT, self._sign),

prody/tests/atomic/test_select.py: 9 warnings
prody/tests/proteins/test_waterbridges.py: 2 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1083: PyparsingDeprecationWarning: 'oneOf' deprecated - use 'one_of'
    (pp.oneOf('** ^'), 2, pp.opAssoc.LEFT, self._pow),

prody/tests/atomic/test_select.py: 9 warnings
prody/tests/proteins/test_waterbridges.py: 2 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1084: PyparsingDeprecationWarning: 'oneOf' deprecated - use 'one_of'
    (pp.oneOf('* / %'), 2, pp.opAssoc.LEFT, self._binop),

prody/tests/atomic/test_select.py: 9 warnings
prody/tests/proteins/test_waterbridges.py: 2 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1085: PyparsingDeprecationWarning: 'oneOf' deprecated - use 'one_of'
    (pp.oneOf('+ -'), 2, pp.opAssoc.LEFT, self._binop),

prody/tests/atomic/test_select.py: 9 warnings
prody/tests/proteins/test_waterbridges.py: 2 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1086: PyparsingDeprecationWarning: 'oneOf' deprecated - use 'one_of'
    (pp.oneOf('< > <= >= == = !='), 2, pp.opAssoc.LEFT,

prody/tests/atomic/test_select.py::TestSelect::testRangeSelection203
prody/tests/atomic/test_select.py::TestSelect::testRangeSelection204
prody/tests/atomic/test_select.py::TestSelect::testRangeSelection209
prody/tests/atomic/test_select.py::TestSelect::testRangeSelection209
prody/tests/atomic/test_select.py::TestSelect::testRangeSelection210
prody/tests/atomic/test_select.py::TestSelect::testRangeSelection210
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:730: PyparsingDeprecationWarning: 'parseString' deprecated - use 'parse_string'
    token = PP_NRANGE.parseString(token)[0]