Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202610/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-cogent, so that this is still
visible in the BTS web page for this package.

Thanks.
--------------------------------------------------------------------------------
[...]
/usr/lib/python3/dist-packages/scinexus/sqlite_data_store.py:76: in open_sqlite_db_rw
    db = _connect_sqlite_db_rw(path)
         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/scinexus/sqlite_data_store.py:83: in _connect_sqlite_db_rw
    db = sqlite3.connect(
E   sqlite3.OperationalError: unable to open database file
=============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1624
  /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1624: PytestConfigWarning: No files were found in testpaths; consider removing or adjusting your testpaths configuration. Searching recursively from the current directory instead.
    self.args, self.args_source = self._decide_args(

../../../../../../usr/lib/python3/dist-packages/_pytest/python.py:124
  /usr/lib/python3/dist-packages/_pytest/python.py:124: PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is deprecated.
  Test: tests/test_evolve/test_coevolution.py::test_joint_entropies, argvalues type: combinations
  Please convert to a list or tuple.
  See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators
    metafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)

We believe that the bug you reported is fixed in the latest version of
python-cogent, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1150529@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Karsten Schöke <karsten.schoeke@geobasis-bb.de> (supplier of updated python-cogent package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Thu, 15 Oct 2026 07:33:43 +0200
Source: python-cogent
Architecture: source
Version: 2026.9.10-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Karsten Schöke <karsten.schoeke@geobasis-bb.de>
Closes: 1150529
Changes:
 python-cogent (2026.9.10-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version 2026.9.10
   * d/patches: rebuild and remove obsolete patches
     - Use-package-version-instead-of-date-based-Sphinx.patch
     - Work-around-failure-in-sphinx-doc-processing.patch
   * d/tests: insert test-init-mkdir.patch Closes: #1150529
   * d/copyright: upstream change license from GPL-2 to BSD-3-Clause
   * Drop the binary python3-cogent3-doc package: the documentation is
     now written in Quarto (doc/**/*.qmd), and the quarto CLI is not available
     in Debian. The docs are kept in the source package until quarto is packaged.
   * Reflow Uploaders field (cme)
   * Remove trailing whitespace in debian/copyright (routine-update)
   * Set upstream metadata fields: Documentation.
   * debputy lint --auto-fix (routine-update)
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