I run Nautilus in spatial mode.
If I have one or more directories open and I keep some other window
on top of them.
I then select an icon on the desktop and choose "Properties".
I then close the dialog. Now one of the other directory windows is focused
and they are all raised above other windows (f.ex. a browser window).
But if I open to directories (f.ex. ~ and "Computer"), then shuffle ~ down
and selected properties on one file in "Computer" it works, ie. no window
re-ordering is done.
I'm using Compiz as a window manager.
Thanks!
//Marcus