#942842 RFP: smoldyn -- spatial stochastic simulator for chemical reaction networks

Package:
wnpp
Source:
wnpp
Submitter:
Gürkan Myczko
Date:
2026-04-13 10:49:16 UTC
Severity:
wishlist
#942842#5
Date:
2019-10-22 09:15:24 UTC
From:
To:
* Package name    : smoldyn
   Version         : 2.61
   Upstream Authors: 2003-2019 Steve Andrews <steven.s.andrews@gmail.com>
* URL             : http://www.smoldyn.org/
* License         : GPL-3
   Description     : spatial stochastic simulator for chemical reaction
networks
  This is a computer program for cell-scale biochemical simulations. It
  simulates each molecule of interest individually to capture natural
  stochasticity and to yield nanometer-scale spatial resolution. It
treats
  other molecules implicitly, enabling it to simulate hundreds of
thousands
  of molecules over several minutes of real time. Simulated molecules
diffuse,
  react, are confined by surfaces, and bind to membranes much as they
would in
  a real biological system.

Package is availabe at http://phd-sid.ethz.ch/debian/smoldyn/