#942845 RFP: breseq -- Find mutations relative to reference sequences

Package:
wnpp
Source:
wnpp
Submitter:
Gürkan Myczko
Date:
2026-04-13 10:49:16 UTC
Severity:
wishlist
#942845#5
Date:
2019-10-22 09:18:04 UTC
From:
To:
* Package name    : breseq
   Version         : 0.34.0
   Upstream Authors: 2010-2019 Jeffrey Barrick
<jeffrey.e.barrick@gmail.com>
                     2010-2019 Jordan Borges
                     2010-2019 Geoffrey Colburn
                     2010-2019 Alex Hu
                     2010-2019 David Knoester
                     2010-2019 Austin Meyer
* URL             : https://github.com/barricklab/breseq
http://barricklab.org/breseq
* License         : GPL-3
   Description     : Find mutations relative to reference sequences
  This is a computational pipeline for finding mutations relative to a
reference
  sequence in short-read DNA re-sequencing data for haploid
microbial-sized
  genomes. It reports single-nucleotide mutations, point insertions and
  deletions, large deletions, and new junctions supported by mosaic reads
  (such as those produced by new mobile element insertions) in an
annotated HTML
  format.

Package is availabe at http://phd-sid.ethz.ch/debian/breseq/

#942845#14
Date:
2021-12-12 21:55:17 UTC
From:
To:
for the record:

Hi,

the embedded version of samtools uses an embedded embedded version of
htslib. This looks rather strange!

Anyway, those need to be mentioned in your debian/copyright.

Thanks!
  Thorsten



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