Subject: ITP: pore-c -- processing data from an ONT poreC run
Package: wnpp
Owner: Steffen Moeller <moeller@debian.org>
Severity: wishlist

* Package name    : pore-c
  Version         : 0.2.0~rc1
  Upstream Author : Copyright: Matthew Pendleton <Matthew.Pendleton@nanoporetech.com>
* URL             : https://github.com/nanoporetech/pore-c
* License         : MPL-2.0
  Programming Lang: Python
  Description     : processing data from an ONT poreC run
 This package is designed to analyse the data from multi-contact pore-C
 reads. It is similar to the pairtools package in scope, however it is
 specifically designed to handle multi-contact reads (aka c-walks). It
 carries out the following operations:
 .
  * pre-processing a reference genome to generate auxiliary files used
    in downstream analyses
  * creating virtual digests of the reference genome
  * processing read-sorted BAM files to filter spurious alignments,
    detect ligation junctions and assign fragments
  * converting the resulting contacts to a pairs format and a
    COO-formatted matrix compatible with Cooler for downstream processing.

Remark: This package is maintained by Steffen Moeller at
https://salsa.debian.org/med-team/pore-c