#970255 ITP: r-cran-immunarch -- Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

Package:
wnpp
Source:
wnpp
Submitter:
Steffen Moeller
Date:
2025-11-29 16:47:20 UTC
Severity:
wishlist
#970255#5
Date:
2020-09-13 20:49:21 UTC
From:
To:
Subject: ITP: r-cran-immunarch -- Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires
Package: wnpp
Owner: Steffen Moeller <moeller@debian.org>
Severity: wishlist

* Package name    : r-cran-immunarch
  Version         : 0.6.5
  Upstream Author : Vadim I. Nazarov
* URL             : https://cran.r-project.org/package=immunarch
* License         : AGPL-3
  Programming Lang: GNU R
  Description     : Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires
 A comprehensive framework for bioinformatics exploratory analysis of
 bulk and single-cell T-cell receptor and antibody repertoires. It
 provides seamless data loading, analysis and visualisation for AIRR
 (Adaptive Immune Receptor Repertoire) data, both bulk immunosequencing
 (RepSeq) and single-cell sequencing (scRNAseq). It implements most of
 the widely used AIRR analysis methods, such as: clonality analysis,
 estimation of repertoire similarities in distribution of clonotypes
 and gene segments, repertoire diversity analysis, annotation of
 clonotypes using external immune receptor databases and clonotype
 tracking in vaccination and cancer studies. A successor to our
 previously published 'tcR' immunoinformatics package.

Remark: This package is maintained by Debian R Packages Maintainers at
https://salsa.debian.org/r-pkg-team/r-cran-immunarch