#997488 q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13

Package:
src:q2cli
Source:
q2cli
Submitter:
Lucas Nussbaum
Date:
2022-05-28 08:42:04 UTC
Severity:
serious
Tags:
#997488#5
Date:
2021-10-23 20:41:08 UTC
From:
To:
Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
The full build log is available from:
http://qa-logs.debian.net/2021/10/23/q2cli_2021.8.0-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
#997488#10
Date:
2021-10-23 22:43:03 UTC
From:
To:
Control: tags -1 + confirmed

Aloha,

From looking up ci.debian.net [1], this q2cli issue seems
related to a recent upgrade of python-click 8.0.2.

[1]: https://ci.debian.net/packages/q/q2cli/testing/amd64/

The multiple failures are probably all related to the following
issue, which can be simply triggered with the --version flag:

	$ qiime --version
	Traceback (most recent call last):
	  File "/usr/bin/qiime", line 33, in <module>
	    sys.exit(load_entry_point('q2cli==2021.8.0', 'console_scripts', 'qiime')())
	  File "/usr/lib/python3/dist-packages/click/core.py", line 1126, in __call__
	    return self.main(*args, **kwargs)
	  File "/usr/lib/python3/dist-packages/click/core.py", line 1050, in main
	    with self.make_context(prog_name, args, **extra) as ctx:
	  File "/usr/lib/python3/dist-packages/click/core.py", line 912, in make_context
	    self.parse_args(ctx, args)
	  File "/usr/lib/python3/dist-packages/q2cli/click/command.py", line 43, in parse_args
	    return super().parse_args(ctx, args)
	  File "/usr/lib/python3/dist-packages/click/core.py", line 1613, in parse_args
	    rest = super().parse_args(ctx, args)
	  File "/usr/lib/python3/dist-packages/click/core.py", line 1364, in parse_args
	    parser = self.make_parser(ctx)
	  File "/usr/lib/python3/dist-packages/q2cli/click/command.py", line 33, in make_parser
	    param.add_to_parser(parser, ctx)
	  File "/usr/lib/python3/dist-packages/click/core.py", line 2639, in add_to_parser
	    parser.add_option(
	  File "/usr/lib/python3/dist-packages/q2cli/click/parser.py", line 126, in add_option
	    option = Q2Option(opts, dest, action=action, nargs=nargs,
	TypeError: __init__() got multiple values for argument 'obj'

Have a good night,  :)
#997488#17
Date:
2021-10-24 09:39:44 UTC
From:
To:
Control: forwarded -1 https://github.com/qiime2/q2cli/issues/259
Control: tags -1 upstream

Good day,

Upstream is aware of the issue and is working on a fix [1].
This it is still a work in progress at the moment.

[1]: https://github.com/qiime2/q2cli/pull/260

Have a nice day,  :)
#997488#28
Date:
2022-05-28 08:39:31 UTC
From:
To:
We believe that the bug you reported is fixed in the latest version of
q2cli, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 997488@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Nilesh Patra <nilesh@debian.org> (supplier of updated q2cli package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
Format: 1.8
Date: Sat, 28 May 2022 13:25:10 +0530
Source: q2cli
Architecture: source
Version: 2021.8.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Closes: 997488
Changes:
 q2cli (2021.8.0-2) unstable; urgency=medium
 .
   * Team upload.
   * Modify upstream changes to make package compat
     with click 8.0 (Closes: #997488)
   * Bump Standards-Version to 4.6.1 (no changes needed)
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 ca985a10af88895ff5d5c03a9f164ed2c45c52bc 8732 q2cli_2021.8.0-2.debian.tar.xz
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